Evidence map›Paper›PMID 23361564›Full record

ArticleNeuro-oncology2013

Inherited variant on chromosome 11q23 increases susceptibility to IDH-mutated but not IDH-normal gliomas regardless of grade or histology.

Terri Rice, Shichun Zheng, Paul A Decker, Kyle M Walsh, Paige Bracci, Yuanyuan Xiao, Lucie S McCoy, Ivan Smirnov, Joseph S Patoka, Helen M Hansen and 22 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Neuro-oncology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Genome-Wide Association Studies in Glioma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2018
    Review
  7. Article
  8. Towards an advanced cell-basedAIMS genetics · 2018
    Review
  9. Treatment of glioblastoma in adults.Therapeutic advances in neurological disorders · 2018
    Review
  10. Article
  11. Review
  12. Article
  13. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 6 institutions in 1 country.

Terri RiceDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA 94107, USA. terri.rice@ucsf.edu
Shichun Zheng
Paul A Decker
Kyle M Walsh
Paige Bracci
Yuanyuan Xiao
Lucie S McCoy
Ivan Smirnov
Joseph S Patoka
Helen M Hansen
George Hsuang
Joe L Wiemels
Tarik Tihan
Alexander R Pico
Michael D Prados
Susan M Chang
Mitchel S Berger
Alissa Caron
Stephanie Fink
Thomas Kollmeyer
Amanda Rynearson
Jesse Voss
Matthew L Kosel
Brooke L Fridley
Daniel H Lachance
Jeanette E Eckel-Passow
Hugues Sicotte
Brian Patrick O'Neill
Caterina Giannini
John K Wiencke
Robert B Jenkins
Margaret R Wrensch
UCSF Helen Diller Family Comprehensive Cancer Center · USGladstone Institutes · USMayo Clinic · USNeurological Surgery · USUniversity of California, San Francisco · USCancer Genetics (United States) · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph F Costello · 2002 to 2026
$57.4M
Targeted MV-CEA as a Potent Antitumor Agent against GBMP50CA108961 · NCI · MAYO CLINIC ROCHESTER · PI O'NEILL, BRIAN PATRICK · 2004 to 2015
$22.5M
CALIFORNIA'S PARTICIPATION IN THE NATIONAL CANCER PREVENTION AND CONTRO PROGRAMU58DP000807 · DP · PUBLIC HEALTH INSTITUTE · PI SNIPES, KURT P · 2007 to 2011
$22.5M
GENETIC EPIDEMIOLOGY OF MALIGNANT GLIOMAR01CA052689 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIENCKE, JOHN K., WRENSCH, MARGARET R. · 1991 to 2015
$20.5M
Training in Molecular& Genetic Epidemiology of CancerR25CA112355 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTE, JOHN S. · 2005 to 2018
$6.5M
Biomarkers of survival in glioma epidemiologyR01CA126831 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIENCKE, JOHN K. · 2008 to 2013
$2.5M
NCCDPHP CDC HHS 1U58 DP000807-01NCCDPHP CDC HHS U58 DP000807NCI NIH HHS CA112355NCI NIH HHS HHSN261201000034CNCI NIH HHS HHSN261201000035CNCI NIH HHS HHSN261201000035INCI NIH HHS HHSN261201000036CNCI NIH HHS P30 CA15083NCI NIH HHS P50CA097257NCI NIH HHS P50 CA108961NCI NIH HHS P50CA108961NCI NIH HHS R01 CA052689NCI NIH HHS R01CA126831NCI NIH HHS R01CA52689NCI NIH HHS R25 CA112355NINDS NIH HHS RC1NS068222Z
6 · The paper itself

Abstract

introductionRecent discoveries of inherited glioma risk loci and acquired IDH mutations are providing new insights into glioma etiology. IDH mutations are common in lower grade gliomas and secondary glioblastomas and uncommon in primary glioblastomas. Because the inherited variant in 11q23 has been associated with risk of lower grade glioma and not with glioblastomas, we hypothesized that this variant increases susceptibility to IDH-mutated gliomas, but not to IDH-wild-type gliomas.

methodsWe tested this hypothesis in patients with glioma and controls from the San Francisco Adult Glioma Study, the Mayo Clinic, and Illumina controls (1102 total patients, 5299 total controls). Case-control additive associations of 11q23 risk alleles (rs498872, T allele) were calculated using logistic regression, stratified by tumor IDH status (mutated or wild-type) and by histology and grade. We also adjusted for the recently discovered 8q24 glioma risk locus rs55705857 G allele.

resultsThe 11q23 glioma risk locus was associated with increased risk of IDH-mutated gliomas of all histologies and grades (odds ratio [OR] = 1.50; 95% confidence interval [CI] = 1.29-1.74; P = 1.3X10(-7)) but not with IDH-wild-type gliomas of any histology or grade (OR = 0.91; 95% CI = 0.81-1.03; P = 0.14). The associations were independent of the rs55705857 G allele.

conclusionA variant at the 11q23 locus increases risk for IDH-mutated but not IDH-wild-type gliomas, regardless of grade or histology.

Indexed as

Genetic Predisposition to DiseaseAdultBiomarkers, TumorBrain NeoplasmsCase-Control StudiesChromosomes, Human, Pair 11Chromosomes, Human, Pair 8FemaleGliomaHumansIsocitrate DehydrogenaseMaleMiddle AgedMutationNeoplasm GradingNeoplasm StagingBiomarkers, TumorIDH1 protein, humanIDH2 protein, humanIsocitrate Dehydrogenase

Identifiers

PMID23361564
PMCPMC3635511
OpenAlexW2115701263

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.