Evidence map›Paper›PMID 23361361›Full record

ArticleMolecular and cellular biochemistry2013

Comparative SRY incorporation on the regulatory regions of pluripotency/differentiation genes in human embryonic carcinoma cells after retinoic acid induction.

Sara Ashrafi Kakhki, Maryam Shahhoseini, Ghasem Hosseini Salekdeh

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Article in Molecular and cellular biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Sara Ashrafi KakhkiDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Maryam Shahhoseini
Ghasem Hosseini Salekdeh
Academic Center for Education, Culture and Research · IRIslamic Azad University, Science and Research Branch · IRRoyan Institute · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the SOX (SRY box) family proteins play critical roles in multiple aspects of development. SRY, as a founder member of SOX family, has been long believed to be involved in the development of sexual gonads by triggering signaling cascades which lead to the formation of testis or ovary from bipotential gonads. However, less is known about other potential regulatory roles of SRY in the development and differentiation. In order to gain further insight into the possible roles of SRY during development, we looked into possible SRY-regulated genes and their levels of expression in a human embryonic carcinoma cell line, named NTera2, before and after induction of differentiation. For this respect, SRY incorporation on the regulatory regions of two groups of genes including OCT4, NANOG, and SOX2 as pluripotency marker genes, and NESTIN and PAX6 as differentiation marker genes were evaluated quantitatively. Chromatin immunoprecipitation using SRY antibody was performed on chromatin extract of a human embryonic carcinoma cell line, NT2/NTERA-2, before and after onset of differentiation. The results showed that incorporation of SRY in both groups of genes was increased after induction of differentiation. Besides, lower expression of OCT4, SOX2, and NANOG and higher expression of PAX6 and NESTIN genes in differentiated cells suggest that SRY may act as a transcription repressor for pluripotency-associated genes and as a transcription activator for differentiation-related genes.

Indexed as

Gene Expression Regulation, DevelopmentalCell DifferentiationChromatin ImmunoprecipitationEmbryonal Carcinoma Stem CellsEye ProteinsGenetic MarkersHomeodomain ProteinsHumansIntermediate Filament ProteinsNanog Homeobox ProteinNerve Tissue ProteinsNestinOctamer Transcription Factor-3Paired Box Transcription FactorsPAX6 Transcription FactorPluripotent Stem CellsEye ProteinsGenetic MarkersHomeodomain ProteinsIntermediate Filament ProteinsNanog Homeobox ProteinNANOG protein, humanNerve Tissue ProteinsNES protein, humanNestinOctamer Transcription Factor-3Paired Box Transcription FactorsPAX6 protein, humanPAX6 Transcription FactorPOU5F1 protein, humanRepressor ProteinsSex-Determining Region Y ProteinSOX2 protein, humanSOXB1 Transcription FactorsSRY protein, humanTretinoin

Identifiers

PMID23361361
OpenAlexW2009192837

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.