Evidence map›Paper›PMID 23360553›Full record

ArticleFEMS microbiology ecology2013

Targeted search for actinomycetes from nearshore and deep-sea marine sediments.

Alejandra Prieto-Davó, Luis J Villarreal-Gómez, Stephanie Forschner-Dancause, Alan T Bull, James E M Stach, David C Smith, Dave C Rowley, Paul R Jensen

Open access · bronzeAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

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  14. Metagenomic small molecule discovery methods.Current opinion in microbiology · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Alejandra Prieto-DavóScripps Institution of Oceanography, University of California San Diego, San Diego, CA, USA. apdavo@unam.mx
Luis J Villarreal-Gómez
Stephanie Forschner-Dancause
Alan T Bull
James E M Stach
David C Smith
Dave C Rowley
Paul R Jensen
University of Rhode Island · USNewcastle University · GBScripps Institution of Oceanography · USUniversity of California, San Diego · USUniversity of Kent · GB

Funding

Exploiting deep ocean biology for biomedical discoveryR15AI093158 · NIAID · UNIVERSITY OF RHODE ISLAND · PI ROWLEY, DAVID C · 2011 to 2011
$418k
NIAID NIH HHS R15 AI093158
6 · The paper itself

Abstract

Sediment samples collected off the coast of San Diego were analyzed for actinomycete diversity using culture-independent techniques. Eight new operational taxonomic units (OTUs) in the Streptomycetaceae were identified as well as new diversity within previously cultured marine OTUs. Sequences belonging to the marine actinomycete genus Salinispora were also detected, despite the fact that this genus has only been reported from more tropical environments. Independent analyses of marine sediments from the Canary Basin (3814 m) and the South Pacific Gyre (5126 and 5699 m) also revealed Salinispora sequences providing further support for the occurrence of this genus in deep-sea sediments. Efforts to culture Salinispora spp. from these samples have yet to be successful. This is the first report of Salinispora spp. from marine sediments > 1100 m and suggests that the distribution of this genus is broader than previously believed.

Indexed as

ActinobacteriaBase SequenceGeologic SedimentsMicromonosporaceaePacific OceanPhylogenyStreptomycetaceae

Identifiers

PMID23360553
PMCPMC3654085
OpenAlexW2048339593

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.