Evidence map›Paper›PMID 23359684›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Landscape of somatic single-nucleotide and copy-number mutations in uterine serous carcinoma.

Siming Zhao, Murim Choi, John D Overton, Stefania Bellone, Dana M Roque, Emiliano Cocco, Federica Guzzo, Diana P English, Joyce Varughese, Sara Gasparrini and 24 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02491099 (A Phase II Evaluation of Afatanib, an Irreversible Human Epidermal Growth Factor Receptor 2), which is not on this map. Cited by 195 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
195citing papers in PubMed, 2 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02491099 phase2recruitingnot on this mapstarted 2015, after this paper: background citation

A Phase II Evaluation of Afatanib, an Irreversible Human Epidermal Growth Factor Receptor 2 (Her2/Neu) Tyrosine Kinase Inhibitor, in Patients With Persistent or Recurrent HER2-positive Uterine Serous Carcinoma

TypeinterventionalSponsorYale UniversityRan2015 to 2028Enrolled50ConditionsHER2/Neu+ Uterine Serous CarcinomaArmsAfatinib
3 · Its place in the literature

Who cites it

195 citing papers in PubMed, 2 syntheses or guidelines pooled it, 334 citations in OpenAlex.

  1. Colombian consensus for the molecular diagnosis of endometrial cancerRevista colombiana de obstetricia y ginecologia · 2024
    Guideline
  2. Pooled it
  3. Trial
  4. Trial
  5. Trial
  6. Human mutation · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Updates and controversies in the management of uterine serous carcinoma and uterine carcinosarcoma.International journal of gynecological cancer : official journal of the International Gynecological Cancer Society · 2025
    Review
  17. Article
  18. Review
  19. Article
  20. Review

135 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 3 institutions in 2 countries.

Siming ZhaoDepartment of Genetics, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06510, USA.
Murim Choi
John D Overton
Stefania Bellone
Dana M Roque
Emiliano Cocco
Federica Guzzo
Diana P English
Joyce Varughese
Sara Gasparrini
Ileana Bortolomai
Natalia Buza
Pei Hui
Maysa Abu-Khalaf
Antonella Ravaggi
Eliana Bignotti
Elisabetta Bandiera
Chiara Romani
Paola Todeschini
Renata Tassi
Laura Zanotti
Luisa Carrara
Sergio Pecorelli
Dan-Arin Silasi
Elena Ratner
Masoud Azodi
Peter E Schwartz
Thomas J Rutherford
Amy L Stiegler
Shrikant Mane
Titus J Boggon
Joseph Schlessinger
Richard P Lifton
Alessandro D Santin
University of Brescia · ITYale University · USHoward Hughes Medical Institute · US

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
CPE Peptide-Based Nanoparticles for the Diagnosis and Therapy of Chemotherapy ResR01CA154460 · NCI · YALE UNIVERSITY · PI SANTIN, ALESSANDRO D · 2011 to 2015
$1.7M
Treatment of Chemotherapy-Resistant Human Ovarian Cancer by Administration of CPER01CA122728 · NCI · YALE UNIVERSITY · PI SANTIN, ALESSANDRO D · 2008 to 2011
$1.4M
Howard Hughes Medical InstituteNCI NIH HHS CA-16359NCI NIH HHS P30 CA016359NCI NIH HHS R01 CA122728NCI NIH HHS R01 CA122728-01A4NCI NIH HHS R01 CA154460NCI NIH HHS R01 CA154460-01A1
6 · The paper itself

Abstract

Uterine serous carcinoma (USC) is a biologically aggressive subtype of endometrial cancer. We analyzed the mutational landscape of USC by whole-exome sequencing of 57 cancers, most of which were matched to normal DNA from the same patients. The distribution of the number of protein-altering somatic mutations revealed that 52 USC tumors had fewer than 100 (median 36), whereas 5 had more than 3,000 somatic mutations. The mutations in these latter tumors showed hallmarks of defects in DNA mismatch repair. Among the remainder, we found a significantly increased burden of mutation in 14 genes. In addition to well-known cancer genes (i.e., TP53, PIK3CA, PPP2R1A, KRAS, FBXW7), there were frequent mutations in CHD4/Mi2b, a member of the NuRD-chromatin-remodeling complex, and TAF1, an element of the core TFIID transcriptional machinery. Additionally, somatic copy-number variation was found to play an important role in USC, with 13 copy-number gains and 12 copy-number losses that occurred more often than expected by chance. In addition to loss of TP53, we found frequent deletion of a small segment of chromosome 19 containing MBD3, also a member of the NuRD-chromatin-modification complex, and frequent amplification of chromosome segments containing PIK3CA, ERBB2 (an upstream activator of PIK3CA), and CCNE1 (a target of FBXW7-mediated ubiquitination). These findings identify frequent mutation of DNA damage, chromatin remodeling, cell cycle, and cell proliferation pathways in USC and suggest potential targets for treatment of this lethal variant of endometrial cancer.

Indexed as

DNA Copy Number VariationsMutationAmino Acid SequenceAnimalsBase Pair MismatchFemaleHumansMolecular Sequence DataSequence Homology, Amino AcidUterine Neoplasms

Identifiers

PMID23359684
PMCPMC3581983
OpenAlexW1984136423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.