Evidence map›Paper›PMID 23359562›Full record

ArticlePloS one2013

The autoimmunity risk variant LYP-W620 cooperates with CSK in the regulation of TCR signaling.

María Luisa de la Puerta, Antonio G Trinidad, María del Carmen Rodríguez, José María de Pereda, Mariano Sánchez Crespo, Yolanda Bayón, Andrés Alonso

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Overexpression of theJournal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  5. Article
  6. Review
  7. Review
  8. Regulation of CD4Frontiers in immunology · 2019
    Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

María Luisa de la PuertaInstituto de Biología y Genética Molecular (IBGM), CSIC-Universidad de Valladolid, Valladolid, Spain.
Antonio G Trinidad
María del Carmen Rodríguez
José María de Pereda
Mariano Sánchez Crespo
Yolanda Bayón
Andrés Alonso
Instituto de Biomedicina y Genética Molecular de Valladolid · ESUniversidad de Valladolid · ESCentro de Investigación del Cáncer · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The protein tyrosine phosphatase LYP, a key regulator of TCR signaling, presents a single nucleotide polymorphism, C1858T, associated with several autoimmune diseases such as type I diabetes, rheumatoid arthritis, and lupus. This polymorphism changes an R by a W in the P1 Pro rich motif of LYP, which binds to CSK SH3 domain, another negative regulator of TCR signaling. Based on the analysis of the mouse homologue, Pep, it was proposed that LYP and CSK bind constitutively to inhibit LCK and subsequently TCR signaling. The detailed study of LYP/CSK interaction, here presented, showed that LYP/CSK interaction was inducible upon TCR stimulation, and involved LYP P1 and P2 motifs, and CSK SH3 and SH2 domains. Abrogating LYP/CSK interaction did not preclude the regulation of TCR signaling by these proteins.

Indexed as

AutoimmunityAutoimmune DiseasesCSK Tyrosine-Protein KinaseElectrophoresis, Polyacrylamide GelFlow CytometryHEK293 CellsHumansImmunohistochemistryJurkat CellsModels, MolecularPhosphorylationPolymorphism, Single NucleotideProtein BindingProtein Tyrosine PhosphatasesReceptors, Antigen, T-CellSignal TransductionCSK protein, humanCSK Tyrosine-Protein KinaseProtein Tyrosine PhosphatasesReceptors, Antigen, T-Cellsrc-Family Kinases

Identifiers

PMID23359562
PMCPMC3554717
OpenAlexW2023227495

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.