ArticleInternational journal of molecular sciences2013
The Transcriptome of Brassica napus L. Roots under Waterlogging at the Seedling Stage.
Article in International journal of molecular sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
26 citing papers in PubMed, 57 citations in OpenAlex.
- Differential response to waterlogging stress in rapeseed (Brassica napus L.): insights from physiological, transcriptomic, and metabolomic analyses.BMC plant biology · 2026Article
- Integrating multiomic resources and gene expression studies to identify candidates for engineering climate-resilientFrontiers in plant science · 2026Review
- Transcriptome and Small-RNA Sequencing Reveals the Response Mechanism ofPlants (Basel, Switzerland) · 2025Article
- The roles of cell wall polysaccharides in response to waterlogging stress in Brassica napus L. root.BMC biology · 2024Article
- The chromosome-level genome of the submerged plant Cryptocoryne crispatula provides insights into the terrestrial-freshwater transition in Araceae.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024Article
- Tissue-Specific Transcriptome and Metabolome Analysis Reveals the Response Mechanism ofInternational journal of molecular sciences · 2023Article
- Transcriptomic Analysis of Distal Parts of Roots Reveals Potentially Important Mechanisms Contributing to Limited Flooding Tolerance of Canola (International journal of molecular sciences · 2022Article
- Physiological and comparative transcriptome analyses reveal the mechanisms underlying waterlogging tolerance in a rapeseed anthocyanin-more mutant.Biotechnology for biofuels and bioproducts · 2022Article
- Transcriptional Response of TwoFrontiers in plant science · 2022Article
- Article
- Transcriptome Analysis Reveals Genes of Flooding-Tolerant and Flooding-Sensitive Rapeseeds Differentially Respond to Flooding at the Germination Stage.Plants (Basel, Switzerland) · 2021Article
- Omics: The way forward to enhance abiotic stress tolerance inGM crops & food · 2021Review
- Transcriptome, physiological and biochemical analysis of Triarrhena sacchariflora in response to flooding stress.BMC genetics · 2019Article
- Transcriptional alterations reveal Bacillus amyloliquefaciens-rice cooperation under salt stress.Scientific reports · 2019Article
- Proteomic Analysis of Rapeseed Root Response to Waterlogging Stress.Plants (Basel, Switzerland) · 2018Article
- Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses.Scientific reports · 2018Article
- Article
- Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress.BMC genomics · 2017Article
- Characterization and Regulation of Aquaporin Genes of Sorghum [Frontiers in plant science · 2017Article
- Effects of MicroRNA-23a on Differentiation and Gene Expression Profiles in 3T3-L1 Adipocytes.Genes · 2016Article
Corrections and comments
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Although rapeseed (Brassica napus L.) is known to be affected by waterlogging, the genetic basis of waterlogging tolerance by rapeseed is largely unknown. In this study, the transcriptome under 0 h and 12 h of waterlogging was assayed in the roots of ZS9, a tolerant variety, using digital gene expression (DGE). A total of 4432 differentially expressed genes were identified, indicating that the response to waterlogging in rapeseed is complicated. The assignments of the annotated genes based on GO (Gene Ontology) revealed there were more genes induced under waterlogging in "oxidation reduction", "secondary metabolism", "transcription regulation", and "translation regulation"; suggesting these four pathways are enhanced under waterlogging. Analysis of the 200 most highly expressed genes illustrated that 144 under normal conditions were down-regulated by waterlogging, while up to 191 under waterlogging were those induced in response to stress. The expression of genes involved under waterlogging is mediated by multiple levels of transcriptional, post-transcriptional, translational and post-translational regulation, including phosphorylation and protein degradation; in particular, protein degradation might be involved in the negative regulation in response to this stress. Our results provide new insight into the response to waterlogging and will help to identify important candidate genes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.