Evidence map›Paper›PMID 23357540›Full record

ArticleDevelopmental biology2013

The 3'UTR of nanos2 directs enrichment in the germ cell lineage of the sea urchin.

Nathalie Oulhen, Takaya Yoshida, Mamiko Yajima, Jia L Song, Tetsushi Sakuma, Naoaki Sakamoto, Takashi Yamamoto, Gary M Wessel

Abstract read
In one paragraph

Article in Developmental biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Somatic cell conversion to a germ cell lineage: A violation or a revelation?Journal of experimental zoology. Part B, Molecular and developmental evolution · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Transient translational quiescence in primordial germ cells.Development (Cambridge, England) · 2017
    Article
  12. Article
  13. Article
  14. Germ Line Versus Soma in the Transition from Egg to Embryo.Current topics in developmental biology · 2015
    Review
  15. Article
  16. The biology of the germ line in echinoderms.Molecular reproduction and development · 2014
    Review
  17. Migration of sea urchin primordial germ cells.Developmental dynamics : an official publication of the American Association of Anatomists · 2014
    Article
  18. Article
  19. Every which way--nanos gene regulation in echinoderms.Genesis (New York, N.Y. : 2000) · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Nathalie OulhenDepartment of Molecular and Cell Biology and Biochemistry, Brown University, 185 Meeting Street, Providence, RI 02912, USA.
Takaya Yoshida
Mamiko Yajima
Jia L Song
Tetsushi Sakuma
Naoaki Sakamoto
Takashi Yamamoto
Gary M Wessel
Brown University · USHiroshima University · JP

Funding

Post-translational Regulation of Germline DeterminantsR01HD028152 · NICHD · BROWN UNIVERSITY · PI WESSEL, GARY M · 1997 to 2016
$3.9M
NICHD NIH HHS 2R01HD028152NICHD NIH HHS R01 HD028152
6 · The paper itself

Abstract

Nanos is a translational regulator required for the survival and maintenance of primordial germ cells during embryogenesis. Three nanos homologs are present in the genome of the sea urchin Strongylocentrotus purpuratus (Sp), and each nanos mRNA accumulates specifically in the small micromere (sMic) lineage. We found that a highly conserved element in the 3' UTR of nanos2 is sufficient for reporter expression selectively in the sMic lineage: microinjection into a Sp fertilized egg of an RNA that contains the GFP open reading frame followed by Sp nanos2 3'UTR leads to selective reporter enrichment in the small micromeres in blastulae. The same result was seen with nanos2 from the sea urchin Hemicentrotus pulcherrimus (Hp). In both species, the 5'UTR alone is not sufficient for the sMic localization but it always increased the sMic reporter enrichment when present with the 3'UTR. We defined an element conserved between Hp and Sp in the nanos2 3'UTR which is necessary and sufficient for protein enrichment in the sMic, and refer to it as GNARLE (Global Nanos Associated RNA Lability Element). We also found that the nanos2 3'UTR is essential for the selective RNA retention in the small micromeres; GNARLE is required but not sufficient for this process. These results show that a combination of selective RNA retention and translational control mechanisms instills nanos accumulation uniquely in the sMic lineage.

Indexed as

3' Untranslated RegionsAnimalsBase PairingBase SequenceCarrier ProteinsCell LineageConserved SequenceGenes, ReporterGerm CellsHemicentrotusMolecular Sequence DataNucleotidesProtein BiosynthesisRegulatory Sequences, Ribonucleic AcidSequence DeletionStrongylocentrotus purpuratus3' Untranslated RegionsCarrier ProteinsNucleotidesRegulatory Sequences, Ribonucleic Acid

Identifiers

PMID23357540
PMCPMC3641670
OpenAlexW1989435072

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.