Evidence map›Paper›PMID 23357279›Full record

ArticleArchives of biochemistry and biophysics2013

Cytochrome P450 107U1 is required for sporulation and antibiotic production in Streptomyces coelicolor.

Zhenhua Tian, Qian Cheng, Francis K Yoshimoto, Li Lei, David C Lamb, F Peter Guengerich

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Biomolecules & therapeutics · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Zhenhua TianDepartment of Biochemistry and Center in Molecular Toxicology, Vanderbilt University School of Medicine, Nashville, TN, USA.
Qian Cheng
Francis K Yoshimoto
Li Lei
David C Lamb
F Peter Guengerich
Vanderbilt University · USUniversity of Wales · GB

Funding

S. coelicolor P450s: Structure/Function/EngineeringR01GM069970 · NIGMS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER, WATERMAN, MICHAEL R · 2004 to 2011
$3.4M
NIGMS NIH HHS R01 GM069970
6 · The paper itself

Abstract

The filamentous bacterium Streptomyces coelicolor has a complex life cycle involving the formation of hair-like aerial mycelia on the colony surface, which differentiate into chains of spores. Genes required for the initiation of aerial mycelium formation have been termed 'bld' (bald), describing the smooth, undifferentiated colonies of mutant strains. We report the identification of a new bld gene designated as sco3099 and biochemical analysis of its encoded enzyme, cytochrome P450 (P450, or CYP) 107U1. Deletion of sco3099 resulted in a mutant defective in aerial hyphae sporulation and sensitive to heat shock, indicating that P450 107U1 plays a key role in growth and development of S. coelicolor. This is the first P450 reported to participate in a sporulation process in Streptomycetes. The substrate and catalytic properties of P450 107U1 were further investigated in mass spectrometry-based metabolomic studies. Glycocholic acid (from the medium) was identified as a substrate of P450 107U1 and was oxidized to glyco-7-oxo-deoxycholic acid. Although this reaction is apparently not relevant to the observed sporulation deficiency, it suggests that P450 107U1 might exert its physiological function by oxidizing other steroid-like molecules.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsCytochrome P-450 Enzyme SystemGlycochenodeoxycholic AcidMutationOxidation-ReductionStreptomyces coelicolor7-oxoglycochenodeoxycholic acidAnti-Bacterial AgentsBacterial ProteinsCytochrome P-450 Enzyme SystemGlycochenodeoxycholic Acid

Identifiers

PMID23357279
PMCPMC3600146
OpenAlexW1975667327

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.