Evidence map›Paper›PMID 23356577›Full record

ArticleBiochemistry2013

Oxidation mode of pyranose 2-oxidase is controlled by pH.

Methinee Prongjit, Jeerus Sucharitakul, Bruce A Palfey, Pimchai Chaiyen

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Tunable Properties of Nature-InspiredMolecules (Basel, Switzerland) · 2020
    Article
  3. Characterization of pyranose oxidase variants for bioelectrocatalytic applications.Biochimica et biophysica acta. Proteins and proteomics · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Methinee ProngjitDepartment of Biochemistry and Center of Excellence in Protein Structure and Function, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
Jeerus Sucharitakul
Bruce A Palfey
Pimchai Chaiyen
Mahidol University · THChulalongkorn University · THUniversity of Michigan–Ann Arbor · US

Funding

Mechanisms of Dihydroorotate DehydrogenasesR01GM061087 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PALFEY, BRUCE A · 2002 to 2011
$2.1M
NIGMS NIH HHS GM61087NIGMS NIH HHS R01 GM061087
6 · The paper itself

Abstract

Pyranose 2-oxidase (P2O) from Trametes multicolor is a flavoenzyme that catalyzes the oxidation of d-glucose and other aldopyranose sugars at the C2 position by using O₂ as an electron acceptor to form the corresponding 2-keto-sugars and H₂O₂. In this study, the effects of pH on the oxidative half-reaction of P2O were investigated using stopped-flow spectrophotometry. The results showed that flavin oxidation occurred via different pathways depending on the pH of the environment. At pH values lower than 8.0, reduced P2O reacts with O₂ to form a C4a-hydroperoxyflavin intermediate, leading to elimination of H₂O₂. At pH 8.0 and higher, the majority of the reduced P2O reacts with O₂ via a pathway that does not allow detection of the C4a-hydroperoxyflavin, and flavin oxidation occurs with decreased rate constants upon the rise in pH. The switching between the two modes of P2O oxidation is controlled by protonation of a group which has a pK(a) of 7.6 ± 0.1. Oxidation reactions of reduced P2O under rapid pH change as performed by stopped-flow mixing were different from the same reactions performed with enzyme pre-equilibrated at the same specified pH values, implying that the protonation of the group which controls the mode of flavin oxidation cannot be rapidly equilibrated with outside solvent. Using a double-mixing stopped-flow experiment, a rate constant for proton dissociation from the reaction site was determined to be 21.0 ± 0.4 s⁻¹.

Indexed as

Carbohydrate DehydrogenasesHydrogen-Ion ConcentrationKineticsOxidation-ReductionOxygenProtonsSpectrophotometryTrametesCarbohydrate DehydrogenasesOxygenProtonspyranose oxidase

Identifiers

PMID23356577
PMCPMC3664292
OpenAlexW2039987472

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.