Evidence map›Paper›PMID 23355633›Full record

ArticlePlant physiology2013

A robust and sensitive synthetic sensor to monitor the transcriptional output of the cytokinin signaling network in planta.

Evelyne Zürcher, Deborah Tavor-Deslex, Dmytro Lituiev, Katalin Enkerli, Paul T Tarr, Bruno Müller

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 184 papers.

0numbers the graph read from it
0cells of the map it votes in
184citing papers in PubMed
22.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

184 citing papers in PubMed, 356 citations in OpenAlex.

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  18. A long-distance inhibitory system regulates haustoria numbers in parasitic plants.Proceedings of the National Academy of Sciences of the United States of America · 2025
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124 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Evelyne ZürcherInstitute of Plant Biology, Zurich-Basel Plant Science Center, University of Zurich, CH-8008 Zurich, Switzerland.
Deborah Tavor-Deslex
Dmytro Lituiev
Katalin Enkerli
Paul T Tarr
Bruno Müller
California Institute of Technology · USUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytokinins are classic plant hormones that orchestrate plant growth, development, and physiology. They affect gene expression in target cells by activating a multistep phosphorelay network. Type-B response regulators, acting as transcriptional activators, mediate the final step in the signaling cascade. Previously, we have introduced a synthetic reporter, Two Component signaling Sensor (TCS)::green fluorescent protein (GFP), which reflects the transcriptional activity of type-B response regulators. TCS::GFP was instrumental in uncovering roles of cytokinin and deepening our understanding of existing functions. However, TCS-mediated expression of reporters is weak in some developmental contexts where cytokinin signaling has a documented role, such as in the shoot apical meristem or in the vasculature of Arabidopsis (Arabidopsis thaliana). We also observed that GFP expression becomes rapidly silenced in TCS::GFP transgenic plants. Here, we present an improved version of the reporter, TCS new (TCSn), which, compared with TCS, is more sensitive to phosphorelay signaling in Arabidopsis and maize (Zea mays) cellular assays while retaining its specificity. Transgenic Arabidopsis TCSn::GFP plants exhibit strong and dynamic GFP expression patterns consistent with known cytokinin functions. In addition, GFP expression has been stable over generations, allowing for crosses with different genetic backgrounds. Thus, TCSn represents a significant improvement to report the transcriptional output profile of phosphorelay signaling networks in Arabidopsis, maize, and likely other plants that display common response regulator DNA-binding specificities.

Indexed as

Transcription, GeneticArabidopsisArabidopsis ProteinsBase SequenceBinding SitesComputational BiologyConsensus SequenceCytokininsGene Expression Regulation, PlantGenes, ReporterGreen Fluorescent ProteinsMolecular Sequence DataPhosphorylationPlant ProteinsSeedlingsSignal TransductionArabidopsis ProteinsARR5 protein, ArabidopsisCytokininsGreen Fluorescent ProteinsPlant ProteinsTranscription Factors

Identifiers

PMID23355633
PMCPMC3585579
OpenAlexW2078745435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.