Evidence map›Paper›PMID 23355209›Full record

ArticleAmerican journal of clinical pathology2013

Colorimetric in situ hybridization identifies MYC gene signal clusters correlating with increased copy number, mRNA, and protein in diffuse large B-cell lymphoma.

Carlo Valentino, Samantha Kendrick, Nathalie Johnson, Randy Gascoyne, Wing C Chan, Dennis Weisenburger, Rita Braziel, James R Cook, Raymond Tubbs, Elias Campo and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of clinical pathology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. ChromogenicCancers · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. An increase inHaematologica · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. The t(14;18)(q32;q21) with extra MYC signal - is it a gray zone lymphoma?International journal of clinical and experimental pathology · 2015
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 5 countries.

Carlo ValentinoDepartment of Pathology, University of Arizona College of Medicine, Tucson, 85724, USA.
Samantha Kendrick
Nathalie Johnson
Randy Gascoyne
Wing C Chan
Dennis Weisenburger
Rita Braziel
James R Cook
Raymond Tubbs
Elias Campo
Andreas Rosenwald
German Ott
Jan Delabie
Elaine Jaffe
Wenjun Zhang
Patrick Brunhoeber
Hiro Nitta
Tom Grogan
Lisa Rimsza
University of Arizona · USVentana Research Corporation (United States) · USCleveland Clinic · USUniversity of Nebraska Medical Center · USBC Cancer Agency · CADr. Margarete Fischer-Bosch-Institute of Clinical Pharmacology · DEHospital Clínic de Barcelona · ESMcGill University · CANational Cancer Institute · USOregon Health & Science University · USOslo University Hospital · NOUniversity of Würzburg · DE

Funding

SPORE in LymphomaP50CA130805 · NCI · UNIVERSITY OF ROCHESTER · PI FISHER, RICHARD I · 2008 to 2012
$11.7M
Integrative Cancer Scholars Training GrantT32CA009213 · NCI · UNIVERSITY OF ARIZONA · PI CAREW, JENNIFER S, CURIEL-LEWANDROWSKI, CLARA · 1985 to 2024
$8.6M
Molecular Diagnosis and Prognosis in Aggressive LymphomaU01CA157581 · NCI · UNIVERSITY OF ARIZONA · PI RIMSZA, LISA · 2011 to 2015
$3.1M
NCI NIH HHS P50 CA130805NCI NIH HHS T32 CA009213NCI NIH HHS U01 CA157581
6 · The paper itself

Abstract

Abnormalities of the MYC oncogene on chromosome 8 are characteristic of Burkitt lymphoma and other aggressive B-cell lymphomas, including diffuse large B-cell lymphoma (DLBCL). We recently described a colorimetric in situ hybridization (CISH) method for detecting extra copies of the MYC gene in DLBCL and the frequent occurrence of excess copies of discrete MYC signals in the context of diploidy or polyploidy of chromosome 8, which correlated with increased mRNA signals. We further observed enlarged MYC signals, which were counted as a single gene copy but, by their dimension and unusual shape, likely consisted of "clusters" of MYC genes. In this study, we sought to further characterize these clusters of MYC signals by determining whether the presence of these correlated with other genetic features, mRNA levels, protein, and overall survival. We found that MYC clusters correlated with an abnormal MYC locus and with increased mRNA. MYC mRNA correlated with protein levels, and both increased mRNA and protein correlated with poorer overall survival. MYC clusters were seen in both the germinal center and activated B-cell subtypes of DLBCL. Clusters of MYC signals may be an underappreciated, but clinically important, feature of aggressive B-cell lymphomas with potential prognostic and therapeutic relevance.

Indexed as

Genes, mycMultigene FamilyAntineoplastic Combined Chemotherapy ProtocolsColorimetryCyclophosphamideDNA, NeoplasmDoxorubicinGene DosageHumansIn Situ HybridizationIn Situ Hybridization, FluorescenceLymph NodesLymphoma, Large B-Cell, DiffusePrednisoneProto-Oncogene Proteins c-mycRNA, MessengerCyclophosphamideDNA, NeoplasmDoxorubicinPrednisoneProto-Oncogene Proteins c-mycRNA, MessengerVincristine

Identifiers

PMID23355209
PMCPMC3971877
OpenAlexW2159393668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.