Evidence map›Paper›PMID 23354702›Full record

ArticleApplied and environmental microbiology2013

Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans.

Héctor Osorio, Stefanie Mangold, Yann Denis, Ivan Ñancucheo, Mario Esparza, D Barrie Johnson, Violaine Bonnefoy, Mark Dopson, David S Holmes

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 154 citations in OpenAlex.

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  9. Goethite dissolution by acidophilic bacteria.Frontiers in microbiology · 2024
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  10. Frontiers in microbiology · 2024
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  16. Deep-SeamBio · 2022
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  17. Article
  18. Genomic Insights into the Ecological Role and Evolution of a NovelApplied and environmental microbiology · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Héctor OsorioCenter for Bioinformatics and Genome Biology, Fundacion Ciencia y Vida, Santiago, and Departamento Ciencias Biologicas, Facultad de Ciencias Biologicas, Universidad Andres Bello, Santiago, Chile.
Stefanie Mangold
Yann Denis
Ivan Ñancucheo
Mario Esparza
D Barrie Johnson
Violaine Bonnefoy
Mark Dopson
David S Holmes
Bangor University · GBCentre National de la Recherche Scientifique · FRUmeå University · SEUniversidad Andrés Bello · CLFundación Ciencia and Vida · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene transcription (microarrays) and protein levels (proteomics) were compared in cultures of the acidophilic chemolithotroph Acidithiobacillus ferrooxidans grown on elemental sulfur as the electron donor under aerobic and anaerobic conditions, using either molecular oxygen or ferric iron as the electron acceptor, respectively. No evidence supporting the role of either tetrathionate hydrolase or arsenic reductase in mediating the transfer of electrons to ferric iron (as suggested by previous studies) was obtained. In addition, no novel ferric iron reductase was identified. However, data suggested that sulfur was disproportionated under anaerobic conditions, forming hydrogen sulfide via sulfur reductase and sulfate via heterodisulfide reductase and ATP sulfurylase. Supporting physiological evidence for H2S production came from the observation that soluble Cu(2+) included in anaerobically incubated cultures was precipitated (seemingly as CuS). Since H(2)S reduces ferric iron to ferrous in acidic medium, its production under anaerobic conditions indicates that anaerobic iron reduction is mediated, at least in part, by an indirect mechanism. Evidence was obtained for an alternative model implicating the transfer of electrons from S(0) to Fe(3+) via a respiratory chain that includes a bc(1) complex and a cytochrome c. Central carbon pathways were upregulated under aerobic conditions, correlating with higher growth rates, while many Calvin-Benson-Bassham cycle components were upregulated during anaerobic growth, probably as a result of more limited access to carbon dioxide. These results are important for understanding the role of A. ferrooxidans in environmental biogeochemical metal cycling and in industrial bioleaching operations.

Indexed as

AcidithiobacillusAnaerobiosisGene Expression ProfilingHydrogen SulfideIronMetabolic Networks and PathwaysOxidation-ReductionProteomeSulfurTranscriptomeHydrogen SulfideIronProteomeSulfur

Identifiers

PMID23354702
PMCPMC3623243
OpenAlexW2108937791

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.