Evidence map›Paper›PMID 23354698›Full record

ArticleApplied and environmental microbiology2013

Recent evolutionary radiation and host plant specialization in the Xylella fastidiosa subspecies native to the United States.

Leonard Nunney, Danel B Vickerman, Robin E Bromley, Stephanie A Russell, John R Hartman, Lisa D Morano, Richard Stouthamer

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. The hidden life ofApplied and environmental microbiology · 2025
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  6. Use ofPlants (Basel, Switzerland) · 2022
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  7. Evidence for Seed Transmission ofFrontiers in plant science · 2022
    Article
  8. Genetic differentiation ofMicrobial genomics · 2021
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Update of the Scientific Opinion on the risks to plant health posed byEFSA journal. European Food Safety Authority · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Leonard NunneyBiology Department, University of California, Riverside, California, USA.
Danel B Vickerman
Robin E Bromley
Stephanie A Russell
John R Hartman
Lisa D Morano
Richard Stouthamer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial pathogen, Xylella fastidiosa, infects many plant species in the Americas, making it a good model for investigating the genetics of host adaptation. We used multilocus sequence typing (MLST) to identify isolates of the native U.S. subsp. multiplex that were largely unaffected by intersubspecific homologous recombination (IHR) and to investigate how their evolutionary history influences plant host specialization. We identified 110 "non-IHR" isolates, 2 minimally recombinant "intermediate" ones (including the subspecific type), and 31 with extensive IHR. The non-IHR and intermediate isolates defined 23 sequence types (STs) which we used to identify 22 plant hosts (73% trees) characteristic of the subspecies. Except for almond, subsp. multiplex showed no host overlap with the introduced subspecies (subspecies fastidiosa and sandyi). MLST sequences revealed that subsp. multiplex underwent recent radiation (<25% of subspecies age) which included only limited intrasubspecific recombination (ρ/θ = 0.02); only one isolated lineage (ST50 from ash) was older. A total of 20 of the STs grouped into three loose phylogenetic clusters distinguished by nonoverlapping hosts (excepting purple leaf plum): "almond," "peach," and "oak" types. These host differences were not geographical, since all three types also occurred in California. ST designation was a good indicator of host specialization. ST09, widespread in the southeastern United States, only infected oak species, and all peach isolates were ST10 (from California, Florida, and Georgia). Only ST23 had a broad host range. Hosts of related genotypes were sometimes related, but often host groupings crossed plant family or even order, suggesting that phylogenetically plastic features of hosts affect bacterial pathogenicity.

Indexed as

Evolution, MolecularCluster AnalysisDNA, BacterialHost SpecificityMolecular Sequence DataMultilocus Sequence TypingPhylogenyPlant DiseasesUnited StatesXylellaDNA, Bacterial

Identifiers

PMID23354698
PMCPMC3623259

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.