Evidence map›Paper›PMID 23354516›Full record

ArticleInternational journal of oncology2013

Microarray analysis of gene expression in vestibular schwannomas reveals SPP1/MET signaling pathway and androgen receptor deregulation.

Miguel Torres-Martin, Luis Lassaletta, Jesus San-Roman-Montero, Jose M De Campos, Alberto Isla, Javier Gavilan, Barbara Melendez, Giovanny R Pinto, Rommel R Burbano, Javier S Castresana and 1 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of oncology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 2 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 2 syntheses or guidelines pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Article
  6. An Overview of Advances in Rare Cancer Diagnosis and Treatment.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Updates on Tumor Biology in Vestibular Schwannoma.Otolaryngologic clinics of North America · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Miguel Torres-MartinResearch Unit, La Paz University Hospital, Hospital La Paz Institute for Health Research (IdiPAZ), 28046 Madrid, Spain. migtorres.martin@gmail.com
Luis Lassaletta
Jesus San-Roman-Montero
Jose M De Campos
Alberto Isla
Javier Gavilan
Barbara Melendez
Giovanny R Pinto
Rommel R Burbano
Javier S Castresana
Juan A Rey
Hospital La Paz Institute for Health Research · ESHospital Universitario Fundación Jiménez Díaz · ESHospital Virgen de la Salud · ESUniversidad de Navarra · ESUniversidade Federal do Pará · BRUniversidade Federal do Piauí · BRUniversidad Rey Juan Carlos · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vestibular schwannomas are benign neoplasms that arise from the vestibular nerve. The hallmark of these tumors is the biallelic inactivation of neurofibromin 2 (NF2). Transcriptomic alterations, such as the neuregulin 1 (Nrg1)/ErbB2 pathway, have been described in schwannomas. In this study, we performed a whole transcriptome analysis in 31 vestibular schwannomas and 9 control nerves in the Affymetrix Gene 1.0 ST platform, validated by quantitative real-time PCR (qRT-PCR) using TaqMan low density arrays. We performed a mutational analysis of NF2 by PCR/denaturing high-performance liquid chromatography (dHPLC) and multiplex ligation-dependent probe amplification (MLPA), as well as a microsatellite marker analysis of the loss of heterozygosity (LOH) of chromosome 22q. The microarray analysis demonstrated that 1,516 genes were deregulated and 48 of the genes were validated by qRT-PCR. At least 2 genetic hits (allelic loss and/or gene mutation) in NF2 were found in 16 tumors, seven cases showed 1 hit and 8 tumors showed no NF2 alteration. MET and associated genes, such as integrin, alpha 4 (ITGA4)/B6, PLEXNB3/SEMA5 and caveolin-1 (CAV1) showed a clear deregulation in vestibular schwannomas. In addition, androgen receptor (AR) downregulation may denote a hormonal effect or cause in this tumor. Furthermore, the osteopontin gene (SPP1), which is involved in merlin protein degradation, was upregulated, which suggests that this mechanism may also exert a pivotal role in schwannoma merlin depletion. Finally, no major differences were observed among tumors of different size, histological type or NF2 status, which suggests that, at the mRNA level, all schwannomas, regardless of their molecular and clinical characteristics, may share common features that can be used in their treatment.

Indexed as

Alternative SplicingApoptosisApoptosis Regulatory ProteinsCaveolin 1Chromosomes, Human, Pair 22Down-RegulationErb-b2 Receptor Tyrosine KinasesErbB ReceptorsFemaleGene ExpressionGene Expression ProfilingHeat-Shock ProteinsHumansIntegrin alpha4Loss of HeterozygosityMaleApoptosis Regulatory ProteinsCaveolin 1EGFR protein, humanERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesERBB3 protein, humanErbB ReceptorsHeat-Shock ProteinsIntegrin alpha4MET protein, humanNeuregulin-1Neurofibromin 2NRG1 protein, humanOsteopontinp21-Activated KinasesPAK2 protein, humanPAK3 protein, humanprostate apoptosis response-4 proteinProto-Oncogene Proteins c-metReceptor, ErbB-3Receptors, AndrogenRNA, MessengerSPP1 protein, humanTransforming Growth Factor beta

Identifiers

PMID23354516
PMCPMC3597452
OpenAlexW2151285732

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.