Evidence map›Paper›PMID 23354119›Full record

ArticleMechanisms of development

Rab GTPases are required for early orientation of the left-right axis in Xenopus.

Laura N Vandenberg, Ryan D Morrie, Guiscard Seebohm, Joan M Lemire, Michael Levin

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Rabs in Signaling and Embryonic Development.International journal of molecular sciences · 2020
    Review
  2. TGF-β Family Signaling in Early Vertebrate Development.Cold Spring Harbor perspectives in biology · 2018
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Laura N VandenbergCenter for Regenerative and Developmental Biology, and Biology Department, Tufts University Medford, MA 02155, USA.
Ryan D Morrie
Guiscard Seebohm
Joan M Lemire
Michael Levin
Tufts University · USUniversity Hospital Münster · DE

Funding

Bioelectrical Controls of MorphogenesisR01GM077425 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI LEVIN, MICHAEL · 2007 to 2010
$1.1M
Bioelectrical controls of left-right asymmetryF32GM087107 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI VANDENBERG, LAURA N. · 2009 to 2010
$98k
NIGMS NIH HHS 1F32GM087107NIGMS NIH HHS F32 GM087107NIGMS NIH HHS R01 GM077425NIGMS NIH HHS R01-GM077425
6 · The paper itself

Abstract

The earliest steps of left-right (LR) patterning in Xenopus embryos are driven by biased intracellular transport that ensures a consistently asymmetric localization of maternal ion channels and pumps in the first 2-4 blastomeres. The subsequent differential net efflux of ions by these transporters generates a bioelectrical asymmetry; this LR voltage gradient redistributes small signaling molecules along the LR axis that later regulate transcription of the normally left-sided Nodal. This system thus amplifies single cell chirality into a true left-right asymmetry across multi-cellular fields. Studies using molecular-genetic gain- and loss-of-function reagents have characterized many of the steps involved in this early pathway in Xenopus. Yet one key question remains: how is the chiral cytoskeletal architecture interpreted to localize ion transporters to the left or right side? Because Rab GTPases regulate nearly all aspects of membrane trafficking, we hypothesized that one or more Rab proteins were responsible for the directed, asymmetric shuttling of maternal ion channel or pump proteins. After performing a screen using dominant negative and wildtype (overexpressing) mRNAs for four different Rabs, we found that alterations in Rab11 expression randomize both asymmetric gene expression and organ situs. We also demonstrated that the asymmetric localization of two ion transporter subunits requires Rab11 function, and that Rab11 is closely associated with at least one of these subunits. Yet, importantly, we found that endogenous Rab11 mRNA and protein are expressed symmetrically in the early embryo. We conclude that Rab11-mediated transport is responsible for the movement of cargo within early blastomeres, and that Rab11 expression is required throughout the early embryo for proper LR patterning.

Indexed as

Body PatterningAnimalsCell PolarityCiliaEmbryo, NonmammalianEpistasis, GeneticGene Expression Regulation, DevelopmentalGenes, DominantHumansIon TransportModels, BiologicalProteolipidsrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsRNA, MessengerSignal TransductionductinProteolipidsrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsRNA, MessengerVacuolar Proton-Translocating ATPases

Identifiers

PMID23354119
PMCPMC10676213
OpenAlexW1978112972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.