Evidence map›Paper›PMID 23354046›Full record

ArticleNature2013

Crystal structure of Prp8 reveals active site cavity of the spliceosome.

Wojciech P Galej, Chris Oubridge, Andrew J Newman, Kiyoshi Nagai

Open access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 235 citations in OpenAlex.

  1. Review
  2. Microbiology (Reading, England) · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Control of 3' splice site selection by the yeast splicing factor Fyv6.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Structural basis of human U5 snRNP late biogenesis and recycling.Nature structural & molecular biology · 2024
    Article
  17. Structure of the human 20S U5 snRNP.Nature structural & molecular biology · 2024
    Article
  18. Article
  19. Structural basis of branching during RNA splicing.Nature structural & molecular biology · 2024
    Article
  20. Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Wojciech P GalejMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.
Chris Oubridge
Andrew J Newman
Kiyoshi Nagai
MRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105184330Medical Research Council U.1051.04.016(78933)
6 · The paper itself

Abstract

The active centre of the spliceosome consists of an intricate network formed by U5, U2 and U6 small nuclear RNAs, and a pre-messenger-RNA substrate. Prp8, a component of the U5 small nuclear ribonucleoprotein particle, crosslinks extensively with this RNA catalytic core. Here we present the crystal structure of yeast Prp8 (residues 885-2413) in complex with Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor. The structure reveals tightly associated domains of Prp8 resembling a bacterial group II intron reverse transcriptase and a type II restriction endonuclease. Suppressors of splice-site mutations, and an intron branch-point crosslink, map to a large cavity formed by the reverse transcriptase thumb, and the endonuclease-like and RNaseH-like domains. This cavity is large enough to accommodate the catalytic core of group II intron RNA. The structure provides crucial insights into the architecture of the spliceosome active site, and reinforces the notion that nuclear pre-mRNA splicing and group II intron splicing have a common origin.

Indexed as

Models, MolecularCatalytic DomainNuclear ProteinsProtein Structure, TertiaryRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpliceosomesAar2p protein, S cerevisiaeNuclear ProteinsPRP8 protein, S cerevisiaeRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearSaccharomyces cerevisiae Proteins

Identifiers

PMID23354046
PMCPMC3672837
OpenAlexW2051694176

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.