Evidence map›Paper›PMID 23353826›Full record

ArticleJournal of molecular biology2013

β-hairpin-mediated nucleation of polyglutamine amyloid formation.

Karunakar Kar, Cody L Hoop, Kenneth W Drombosky, Matthew A Baker, Ravindra Kodali, Irene Arduini, Patrick C A van der Wel, W Seth Horne, Ronald Wetzel

Abstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. An Improved Turn Structure for Inducing β-Hairpin Formation in Peptides.Angewandte Chemie (International ed. in English) · 2021
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Karunakar KarDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Cody L Hoop
Kenneth W Drombosky
Matthew A Baker
Ravindra Kodali
Irene Arduini
Patrick C A van der Wel
W Seth Horne
Ronald Wetzel
University of Pittsburgh · USInstitute for Neurodegenerative Disorders · US

Funding

Structures and Properties of Polyglutamine Proteins and Their AggregatesR01AG019322 · NIA · UNIVERSITY OF TENNESSEE KNOXVILLE · PI WETZEL, RONALD B · 2001 to 2014
$4.6M
Training in the Molecular Biophysics and Structural BiologyT32GM088119 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HINCK, ANDREW P · 2011 to 2020
$1.6M
Mechanisms of amyloid nucleationR01GM099718 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WETZEL, RONALD B · 2012 to 2015
$1.1M
NIA NIH HHS R01 AG019322NIGMS NIH HHS R01 GM099718NIGMS NIH HHS T32 GM088119
6 · The paper itself

Abstract

The conformational preferences of polyglutamine (polyQ) sequences are of major interest because of their central importance in the expanded CAG repeat diseases that include Huntington's disease. Here, we explore the response of various biophysical parameters to the introduction of β-hairpin motifs within polyQ sequences. These motifs (tryptophan zipper, disulfide, d-Pro-Gly, Coulombic attraction, l-Pro-Gly) enhance formation rates and stabilities of amyloid fibrils with degrees of effectiveness well correlated with their known abilities to enhance β-hairpin formation in other peptides. These changes led to decreases in the critical nucleus for amyloid formation from a value of n=4 for a simple, unbroken Q23 sequence to approximate unitary n values for similar length polyQs containing β-hairpin motifs. At the same time, the morphologies, secondary structures, and bioactivities of the resulting fibrils were essentially unchanged from simple polyQ aggregates. In particular, the signature pattern of solid-state NMR (13)C Gln resonances that appears to be unique to polyQ amyloid is replicated exactly in fibrils from a β-hairpin polyQ. Importantly, while β-hairpin motifs do produce enhancements in the equilibrium constant for nucleation in aggregation reactions, these Kn values remain quite low (~10(-)(10)) and there is no evidence for significant enhancement of β-structure within the monomer ensemble. The results indicate an important role for β-turns in the nucleation mechanism and structure of polyQ amyloid and have implications for the nature of the toxic species in expanded CAG repeat diseases.

Indexed as

Protein Structure, SecondaryAmino Acid SequenceAmyloidAnimalsExonsGlutamineGreen Fluorescent ProteinsHuntingtin ProteinKineticsMagnetic Resonance SpectroscopyMicroscopy, ConfocalMicroscopy, ElectronModels, MolecularMolecular Sequence DataMutationNerve Tissue ProteinsAmyloidGlutamineGreen Fluorescent ProteinsHtt protein, ratHuntingtin ProteinNerve Tissue ProteinsNuclear ProteinsPeptidespolyglutamine

Identifiers

PMID23353826
PMCPMC3602386
OpenAlexW2042521416

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.