Evidence map›Paper›PMID 23352142›Full record

ArticleChemistry & biology2013

Effector kinase coupling enables high-throughput screens for direct HIV-1 Nef antagonists with antiretroviral activity.

Lori A Emert-Sedlak, Purushottam Narute, Sherry T Shu, Jerrod A Poe, Haibin Shi, Naveena Yanamala, John Jeff Alvarado, John S Lazo, Joanne I Yeh, Paul A Johnston and 1 more

Open access · greenAbstract read
In one paragraph

Article in Chemistry & biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 52 citations in OpenAlex.

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  14. Concanamycin A counteracts HIV-1 Nef to enhance immune clearance of infected primary cells by cytotoxic T lymphocytes.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Lori A Emert-SedlakDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15219, USA.
Purushottam Narute
Sherry T Shu
Jerrod A Poe
Haibin Shi
Naveena Yanamala
John Jeff Alvarado
John S Lazo
Joanne I Yeh
Paul A Johnston
Thomas E Smithgall
University of Pittsburgh · US

Funding

Small Molecule Inhibitors of HIV Nef SignalingR01AI057083 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SMITHGALL, THOMAS E. · 2003 to 2019
$5.1M
SRC FAMILY KINASES AS MOLECULAR TARGETS FOR HIV NEFR01CA081398 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SMITHGALL, THOMAS E. · 1998 to 2010
$1.8M
Structural Biology of HIV Nef-Src Family Kinase ComplexesR21AI077444 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SMITHGALL, THOMAS E. · 2009 to 2010
$417k
Targeting HIV-1 Nef with Small MoleculesR03MH083223 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SMITHGALL, THOMAS E. · 2008 to 2008
$25k
NCI NIH HHS R01 CA081398NIAID NIH HHS R01 AI057083NIAID NIH HHS R21 AI077444NIMH NIH HHS R03 MH083223NIMH NIH HHS X01 MH083223
6 · The paper itself

Abstract

HIV-1 Nef, a critical AIDS progression factor, represents an important target protein for antiretroviral drug discovery. Because Nef lacks intrinsic enzymatic activity, we developed an assay that couples Nef to the activation of Hck, a Src family member and Nef effector protein. Using this assay, we screened a large, diverse chemical library and identified small molecules that block Nef-dependent Hck activity with low micromolar potency. Of these, a diphenylpyrazolo compound demonstrated submicromolar potency in HIV-1 replication assays against a broad range of primary Nef variants. This compound binds directly to Nef via a pocket formed by the Nef dimerization interface and disrupts Nef dimerization in cells. Coupling of nonenzymatic viral accessory factors to host cell effector proteins amenable to high-throughput screening may represent a general strategy for the discovery of new antimicrobial agents.

Indexed as

Anti-Retroviral AgentsCell LineHIV-1HIV InfectionsHumansMolecular Docking Simulationnef Gene Products, Human Immunodeficiency VirusProtein MultimerizationProto-Oncogene Proteins c-hckPyrazolesSmall Molecule LibrariesVirus ReplicationAnti-Retroviral Agentsnef Gene Products, Human Immunodeficiency VirusProto-Oncogene Proteins c-hckPyrazolesSmall Molecule Libraries

Identifiers

PMID23352142
PMCPMC3559019
OpenAlexW2071838751

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.