Evidence map›Paper›PMID 23349462›Full record

ArticleThe Journal of biological chemistry2013

The MukB-ParC interaction affects the intramolecular, not intermolecular, activities of topoisomerase IV.

Ryo Hayama, Soon Bahng, Mehmet E Karasu, Kenneth J Marians

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Reconstitution of SPO11-dependent double-strand break formation.bioRxiv : the preprint server for biology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. A Topology-Centric View on Mitotic Chromosome Architecture.International journal of molecular sciences · 2017
    Review
  13. Article
  14. Article
  15. MukB-mediated Catenation of DNA Is ATP and MukEF Independent.The Journal of biological chemistry · 2016
    Article
  16. SMC complexes: from DNA to chromosomes.Nature reviews. Molecular cell biology · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ryo HayamaPhysiology, Biophysics, and Systems Biology Graduate Program, Weill Cornell Graduate School of Medical Sciences, New York, New York 10065.
Soon BahngMolecular Biology Program, Jr. Graduate School of Biomedical Sciences, Memorial Sloan-Kettering Cancer Center, New York, New York 10065.
Mehmet E KarasuLouis V. Gerstner, Jr. Graduate School of Biomedical Sciences, Memorial Sloan-Kettering Cancer Center, New York, New York 10065.
Kenneth J MariansMolecular Biology Program, Jr. Graduate School of Biomedical Sciences, Memorial Sloan-Kettering Cancer Center, New York, New York 10065; Louis V. Gerstner, Jr. Graduate School of Biomedical Sciences, Memorial Sloan-Kettering Cancer Center, New York, New York 10065. Electronic address: kmarians@sloankettering.edu.
Memorial Sloan Kettering Cancer Center · USCornell University · US

Funding

Topoisomerases, Condensins, and Chromosome SegregationR01GM034558 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI MARIANS, KENNETH J · 1985 to 2017
$6.6M
NIGMS NIH HHS GM34558NIGMS NIH HHS R01 GM034558
6 · The paper itself

Abstract

Proper chromosome organization is accomplished through binding of proteins such as condensins that shape the DNA and by modulation of chromosome topology by the action of topoisomerases. We found that the interaction between MukB, the bacterial condensin, and ParC, a subunit of topoisomerase IV, enhanced relaxation of negatively supercoiled DNA and knotting by topoisomerase IV, which are intramolecular DNA rearrangements but not decatenation of multiply linked DNA dimers, which is an intermolecular DNA rearrangement required for proper segregation of daughter chromosomes. MukB DNA binding and a specific chiral arrangement of the DNA was required for topoisomerase IV stimulation because relaxation of positively supercoiled DNA was unaffected. This effect could be attributed to a more effective topological reconfiguration of the negatively supercoiled compared with positively supercoiled DNA by MukB. These data suggest that the MukB-ParC interaction may play a role in chromosome organization rather than in separation of daughter chromosomes.

Indexed as

Gene Expression Regulation, BacterialAdenosine TriphosphatasesCatalysisChromosomal Proteins, Non-HistoneChromosomesDimerizationDNADNA-Binding ProteinsDNA, SuperhelicalDNA Topoisomerase IVEscherichia coliEscherichia coli ProteinsMultiprotein ComplexesMutationNucleic Acid ConformationPlasmidsAdenosine TriphosphatasesChromosomal Proteins, Non-Histonecondensin complexesDNADNA-Binding ProteinsDNA, SuperhelicalDNA Topoisomerase IVEscherichia coli ProteinsMukB protein, E coliMultiprotein Complexes

Identifiers

PMID23349462
PMCPMC3597806
OpenAlexW1973798207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.