Evidence map›Paper›PMID 23349361›Full record

ArticleHuman molecular genetics2013

Protein profiles in Tc1 mice implicate novel pathway perturbations in the Down syndrome brain.

Md Mahiuddin Ahmed, A Ranjitha Dhanasekaran, Suhong Tong, Frances K Wiseman, Elizabeth M C Fisher, Victor L J Tybulewicz, Katheleen J Gardiner

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Genetic Mapping of APP and Amyloid-β Biology Modulation by Trisomy 21.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  3. Article
  4. Mouse models of aneuploidy to understand chromosome disorders.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Deimination Protein Profiles inFrontiers in immunology · 2020
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Md Mahiuddin AhmedDepartment of Pediatrics, Linda Crnic Institute for Down Syndrome, University of Colorado Denver School of Medicine, 12700 E 19th Avenue, Aurora, CO 80045, USA.
A Ranjitha Dhanasekaran
Suhong Tong
Frances K Wiseman
Elizabeth M C Fisher
Victor L J Tybulewicz
Katheleen J Gardiner
University College London · GBColorado School of Public Health · USUniversity of Colorado Denver · US

Funding

Medical Research Council G0601056Medical Research Council MC_U117527252NICHD NIH HHS HD071585PHS HHS U117527252Wellcome Trust 080174
6 · The paper itself

Abstract

Tc1 mouse model of Down syndrome (DS) is functionally trisomic for ∼120 human chromosome 21 (HSA21) classical protein-coding genes. Tc1 mice display features relevant to the DS phenotype, including abnormalities in learning and memory and synaptic plasticity. To determine the molecular basis for the phenotypic features, the levels of 90 phosphorylation-specific and phosphorylation-independent proteins were measured by Reverse Phase Protein Arrays in hippocampus and cortex, and 64 in cerebellum, of Tc1 mice and littermate controls. Abnormal levels of proteins involved in MAP kinase, mTOR, GSK3B and neuregulin signaling were identified in trisomic mice. In addition, altered correlations among the levels of N-methyl-D-aspartate (NMDA) receptor subunits and the HSA21 proteins amyloid beta (A4) precursor protein (APP) and TIAM1, and between immediate early gene (IEG) proteins and the HSA21 protein superoxide dismutase-1 (SOD1) were found in the hippocampus of Tc1 mice, suggesting altered stoichiometry among these sets of functionally interacting proteins. Protein abnormalities in Tc1 mice were compared with the results of a similar analysis of Ts65Dn mice, a DS mouse model that is trisomic for orthologs of 50 genes trisomic in the Tc1 plus an additional 38 HSA21 orthologs. While there are similarities, abnormalities unique to the Tc1 include increased levels of the S100B calcium-binding protein, mTOR proteins RAPTOR and P70S6, the AMP-kinase catalytic subunit AMPKA, the IEG proteins FBJ murine osteosarcoma viral oncogene homolog (CFOS) and activity-regulated cytoskeleton-associated protein (ARC), and the neuregulin 1 receptor ERBB4. These data identify novel perturbations, relevant to neurological function and to some seen in Alzheimer's disease, that may occur in the DS brain, potentially contributing to phenotypic features and influencing drug responses.

Indexed as

Gene Expression ProfilingAdaptor Proteins, Signal TransducingAnimalsBrainCalcium-Binding ProteinsDisease Models, AnimalDown SyndromeFemaleGene Expression RegulationGuanine Nucleotide Exchange FactorsMaleMiceMice, Inbred C57BLNeoplasm ProteinsNerve Growth FactorsPhosphorylationAdaptor Proteins, Signal TransducingCalcium-Binding ProteinsGuanine Nucleotide Exchange FactorsmTOR protein, mouseNeoplasm ProteinsNerve Growth FactorsReceptors, N-Methyl-D-AspartateRegulatory-Associated Protein of mTORRptor protein, mouseS100B protein, humanS100b protein, mouseS100 Calcium Binding Protein beta SubunitS100 ProteinsTcim protein, mouseTiam1 protein, mouseT-Lymphoma Invasion and Metastasis-inducing Protein 1TOR Serine-Threonine Kinases

Identifiers

PMID23349361
PMCPMC3613160
OpenAlexW2131055269

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.