Evidence map›Paper›PMID 23349292›Full record

ArticleScience (New York, N.Y.)2013

Tunable signal processing through modular control of transcription factor translocation.

Nan Hao, Bogdan A Budnik, Jeremy Gunawardena, Erin K O'Shea

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 153 citations in OpenAlex.

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  7. Cpeb4-mediated Dclk2 promotes neuronal pyroptosis induced by chronic cerebral ischemia through phosphorylation of Ehf.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2024
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nan HaoHarvard University Faculty of Arts and Sciences Center for Systems Biology, Cambridge, MA 02138, USA.
Bogdan A Budnik
Jeremy Gunawardena
Erin K O'Shea
Harvard University · US

Funding

Complex Dynamics in Multisite PhosphorylationR01GM081578 · NIGMS · HARVARD MEDICAL SCHOOL · PI GUNAWARDENA, JEREMY · 2008 to 2011
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM081578
6 · The paper itself

Abstract

Signaling pathways can induce different dynamics of transcription factor (TF) activation. We explored how TFs process signaling inputs to generate diverse dynamic responses. The budding yeast general stress-responsive TF Msn2 acted as a tunable signal processor that could track, filter, or integrate signals in an input-dependent manner. This tunable signal processing appears to originate from dual regulation of both nuclear import and export by phosphorylation, as mutants with one form of regulation sustained only one signal-processing function. Versatile signal processing by Msn2 is crucial for generating distinct dynamic responses to different natural stresses. Our findings reveal how complex signal-processing functions are integrated into a single molecule and provide a guide for the design of TFs with "programmable" signal-processing functions.

Indexed as

Signal TransductionActive Transport, Cell NucleusCell NucleusCyclic AMP-Dependent Protein KinasesCytoplasmDNA-Binding ProteinsModels, BiologicalNuclear Export SignalsNuclear Localization SignalsOsmotic PressureOxidative StressPhosphorylationProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalCyclic AMP-Dependent Protein KinasesDNA-Binding ProteinsMSN2 protein, S cerevisiaeNuclear Export SignalsNuclear Localization Signalsphosphoprotein phosphatase inhibitor 1ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID23349292
PMCPMC3746486
OpenAlexW2054915008

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.