Evidence map›Paper›PMID 23347134›Full record

ArticleMolecular microbiology2013

Direct evidence for the adaptive role of copy number variation on antifolate susceptibility in Plasmodium falciparum.

Adina Heinberg, Edwin Siu, Chaya Stern, Elizabeth A Lawrence, Michael T Ferdig, Kirk W Deitsch, Laura A Kirkman

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 2 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 2 syntheses or guidelines pooled it, 63 citations in OpenAlex.

  1. Pooled it
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  9. Genomics reveals heterogeneousmedRxiv : the preprint server for health sciences · 2024
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  14. Frontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Adina HeinbergDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY, USA.
Edwin Siu
Chaya Stern
Elizabeth A Lawrence
Michael T Ferdig
Kirk W Deitsch
Laura A Kirkman
Cornell University · USUniversity of Notre Dame · US

Funding

Var gene regulation and antigenic variation in malariaR01AI052390 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI DEITSCH, KIRK W · 2002 to 2019
$6.6M
DNA repair and recombination within the var gene family of P. falciparumR01AI099327 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI DEITSCH, KIRK W · 2012 to 2016
$2.2M
Genetic diversity in virulence genes of Plasmodium falciparumK08AI076635 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI KIRKMAN, LAURA · 2008 to 2012
$655k
NIAID NIH HHS AI 52390NIAID NIH HHS AI76635NIAID NIH HHS AI 99327NIAID NIH HHS K08 AI076635NIAID NIH HHS R01 AI052390NIAID NIH HHS R01 AI099327
6 · The paper itself

Abstract

Resistance to antimalarials targeting the folate pathway is widespread. GTP-cyclohydrolase (gch1), the first enzyme in this pathway, exhibits extensive copy number variation (CN) in parasite isolates from areas with a history of longstanding antifolate use. Increased CN of gch1 is associated with a greater number of point mutations in enzymes targeted by the antifolates, pyrimethamine and sulphadoxine. While these observations suggest that increases in gch1 CN are an adaptation to drug pressure, changes in CN have not been experimentally demonstrated to directly alter drug susceptibility. To determine if changes in gch1 expression alone modify pyrimethamine sensitivity, we manipulated gch1 CN in several parasite lines to test the effect on drug sensitivity. We report that increases in gch1 CN alter pyrimethamine resistance in most parasites lines. However we find evidence of a detrimental effect of very high levels of gch1 overexpression in parasite lines with high endogenous levels of gch1 expression, revealing the importance of maintaining balance in the folate pathway and implicating changes in gch1 expression in preserving proper metabolic flux. This work expands our understanding of parasite adaptation to drug pressure and provides a possible mechanism for how specific mutations become fixed within parasite populations.

Indexed as

Adaptation, BiologicalDrug ResistanceGene DosageAntimalarialsFolic Acid AntagonistsGenes, ProtozoanPlasmodium falciparumPyrimethamineAntimalarialsFolic Acid AntagonistsPyrimethamine

Identifiers

PMID23347134
PMCPMC3654098
OpenAlexW2159524000

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.