ArticleJournal of biological physics2002
Phylogeny Based on Whole Genome as inferred from Complete Information Set Analysis.
Article in Journal of biological physics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
7 citing papers in PubMed.
- Exploring objective feature sets in constructing the evolution relationship of animal genome sequences.BMC genomics · 2023Article
- Article
- Metabolic classification of microbial genomes using functional probes.BMC genomics · 2012Article
- Nephele: genotyping via complete composition vectors and MapReduce.Source code for biology and medicine · 2011Article
- Phylogenetic analysis of protein sequences based on distribution of length about common sub-string.The protein journal · 2011Article
- CVTree: a phylogenetic tree reconstruction tool based on whole genomes.Nucleic acids research · 2004Article
- Phylogeny of SARS-CoV as inferred from complete genome comparison.Chinese science bulletin = Kexue tongbao · 2003Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Previous molecular phylogeny algorithms mainly rely onmulti-sequence alignments of cautiously selected characteristic sequences,thus not directly appropriate for whole genome phylogeny where eventssuch as rearrangements make full-length alignments impossible. Weintroduce here the concept of Complete Information Set (CIS) and itsmeasurement implementation as evolution distance without reference tosizes. As method proof-test, the 16s rRNA sequences of 22 completelysequenced Bacteria and Archaea species are used to reconstruct aphylogenetic tree, which is generally consistent with the commonlyaccepted one. Based on whole genome, our further efforts yield a highlyrobust whole genome phylogenetic tree, supporting separate monophyleticcluster of species with similar phenotype as well as the early evolution ofthermophilic Bacteria and late diverging of Eukarya. The purpose of thiswork is not to contradict or confirm previous phylogeny standards butrather to bring a brand-new algorithm and tool to the phylogeny researchcommunity. The software to estimate the sequence distance and materialsused in this study are available upon request to corresponding author.
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Registered trials
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