Evidence map›Paper›PMID 23345617›Full record

ArticleNucleic acids research2013

Insight into centromere-binding properties of ParB proteins: a secondary binding motif is essential for bacterial genome maintenance.

Aurore Sanchez, Jérôme Rech, Cyrielle Gasc, Jean-Yves Bouet

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  10. Review
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  12. Article
  13. Insights into ParB spreading from the complex structure of Spo0J and parS.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. A propagating ATPase gradient drives transport of surface-confined cellular cargo.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Aurore SanchezLaboratoire de Microbiologie et Génétique Moléculaires, Centre National de la Recherche Scientifique, F-31000 Toulouse, France.
Jérôme Rech
Cyrielle Gasc
Jean-Yves Bouet
Centre National de la Recherche Scientifique · FRUniversité Toulouse III - Paul Sabatier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ParB proteins are one of the three essential components of partition systems that actively segregate bacterial chromosomes and plasmids. In binding to centromere sequences, ParB assembles as nucleoprotein structures called partition complexes. These assemblies are the substrates for the partitioning process that ensures DNA molecules are segregated to both sides of the cell. We recently identified the sopC centromere nucleotides required for binding to the ParB homologue of plasmid F, SopB. This analysis also suggested a role in sopC binding for an arginine residue, R219, located outside the helix-turn-helix (HTH) DNA-binding motif previously shown to be the only determinant for sopC-specific binding. Here, we demonstrated that the R219 residue is critical for SopB binding to sopC during partition. Mutating R219 to alanine or lysine abolished partition by preventing partition complex assembly. Thus, specificity of SopB binding relies on two distinct motifs, an HTH and an arginine residue, which define a split DNA-binding domain larger than previously thought. Bioinformatic analysis over a broad range of chromosomal ParBs generalized our findings with the identification of a non-HTH positively charged residue essential for partition and centromere binding, present in a newly identified highly conserved motif. We propose that ParB proteins possess two DNA-binding motifs that form an extended centromere-binding domain, providing high specificity.

Indexed as

Genome, BacterialAmino Acid MotifsAmino Acid SequenceCentromereConserved SequenceDNA, BacterialDNA PrimaseElectrophoretic Mobility Shift AssayEndodeoxyribonucleasesEscherichia coliEscherichia coli ProteinsExodeoxyribonucleasesMolecular Sequence DataPlasmidsProtein BindingProtein Structure, TertiaryDNA, BacterialdnaG protein, E coliDNA PrimaseEndodeoxyribonucleasesEscherichia coli ProteinsExodeoxyribonucleasesSopB protein, E coli

Identifiers

PMID23345617
PMCPMC3597684
OpenAlexW2110810354

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.