Evidence map›Paper›PMID 23345508›Full record

ArticleJournal of virology2013

Diversity of ubiquitin and ISG15 specificity among nairoviruses' viral ovarian tumor domain proteases.

Glenn C Capodagli, Michelle K Deaton, Erica A Baker, Ryan J Lumpkin, Scott D Pegan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Crimean-Congo haemorrhagic fever virus.Nature reviews. Microbiology · 2023
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. ISG15: It's Complicated.Journal of molecular biology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Glenn C CapodagliDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado, USA.
Michelle K Deaton
Erica A Baker
Ryan J Lumpkin
Scott D Pegan
University of Denver · US

Funding

Assessment of deubiquitinating and deISGylating activity; specificity motifs amonR03AI092249 · NIAID · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI PEGAN, SCOTT DUSAN · 2011 to 2012
$144k
Molecular probes for a vOTU from CCHFV using a fluorogenic peptideR03MH097507 · NIMH · UNIVERSITY OF GEORGIA · PI PEGAN, SCOTT DUSAN · 2012 to 2013
$73k
NIAID NIH HHS 1R03AI092249-01NIAID NIH HHS R03 AI092249NIMH NIH HHS 1R03MH097507-01A1NIMH NIH HHS R03 MH097507
6 · The paper itself

Abstract

Nairoviruses are responsible for numerous diseases that affect both humans and animal. Recent work has implicated the viral ovarian tumor domain (vOTU) as a possible nairovirus virulence factor due to its ability to edit ubiquitin (Ub) bound to cellular proteins and, at least in the case of Crimean-Congo hemorrhagic fever virus (CCHFV), to cleave the Ub-like protein interferon-stimulated gene 15 (ISG15), a protein involved in the regulation of host immunity. The prospective roles of vOTUs in immune evasion have generated several questions concerning whether vOTUs act through a preserved specificity for Ub- and ISG15-conjugated proteins and where that specificity may originate. To gain insight into the substrate specificity of vOTUs, enzymological studies were conducted on vOTUs from Dugbe, CCHFV, and Erve nairoviruses. These studies revealed that vOTUs originating from different nairoviruses display a significant divergence in their preference toward Ub and ISG15. In addition, a recently identified vOTU from turnip yellow mosaic tymovirus was evaluated to elucidate any possible similarities between vOTUs originating from different viral families. Although possessing a similar preference for certain polymeric Ub moieties, its activity toward Ub in general was significantly less then those of nairoviruses. Lastly, the X-ray crystallographic structure of the vOTU from the Dugbe nairovirus was obtained in complex with Ub to reveal structural commonalities of vOTUs originating from nairoviruses. The structure suggests that divergences between nairovirus vOTUs specificity originate at the primary structural level. Comparison of this structure to that originating from CCHFV identified key residues that infer the substrate specificity of vOTUs.

Indexed as

Models, MolecularAmino Acid SequenceCrystallography, X-RayCytokinesElectrophoretic Mobility Shift AssayMolecular Sequence DataMutagenesis, Site-DirectedNairovirusPeptide HydrolasesProtein ConformationSequence AlignmentSpecies SpecificitySubstrate SpecificityUbiquitinUbiquitinsViral ProteinsCytokinesISG15 protein, humanPeptide HydrolasesUbiquitinUbiquitinsViral ProteinsVirulence Factors

Identifiers

PMID23345508
PMCPMC3624237
OpenAlexW2168445689

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.