Evidence map›Paper›PMID 23342267›Full record

ArticleCancer medicine2012

Epigenetic inactivation of inhibitor of differentiation 4 (Id4) correlates with prostate cancer.

Pankaj Sharma, Swathi Chinaranagari, Divya Patel, Jason Carey, Jaideep Chaudhary

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. HCRP1, ID4 and Glypican-3: an optimal panel of biomarkers for diagnosis of hepatocellular carcinoma.International journal of clinical and experimental pathology · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. ID4 promotes AR expression and blocks tumorigenicity of PC3 prostate cancer cells.Biochemical and biophysical research communications · 2016
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Prostate cancer epigenome.Methods in molecular biology (Clifton, N.J.) · 2015
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pankaj SharmaCenter For Cancer Research and Therapeutics Development, Clark Atlanta University, Atlanta, Georgia, USA.
Swathi Chinaranagari
Divya Patel
Jason Carey
Jaideep Chaudhary
Clark Atlanta University · US

Funding

THEORY OF PLANNED BEHAVIOR VS ETHNICITY /PHYSICAL ACTIVIG12RR003062 · NCRR · CLARK ATLANTA UNIVERSITY · PI CHAUDHARY, JAIDEEP · 1985 to 2011
$15.5M
Inhibitor of Differentiation Gene Expression and Function in Prostate CellsR01CA128914 · NCI · CLARK ATLANTA UNIVERSITY · PI CHAUDHARY, JAIDEEP · 2009 to 2013
$1.4M
NCI NIH HHS NCI CA128914NCI NIH HHS R01 CA128914NCRR NIH HHS G12 RR003062NCRR NIH HHS RCMI G1RR03062
6 · The paper itself

Abstract

The inhibitor of DNA-binding (Id) proteins, Id1-4 are negative regulators of basic helix-loop-helix (bHLH) transcription factors. As key regulators of cell cycle and differentiation, expression of Id proteins are increasingly observed in many cancers and associated with aggressiveness of the disease. Of all the four Id proteins, the expression of Id1, Id2, and to a lesser extent, Id3 in prostate cancer and the underlying molecular mechanism is relatively well known. On the contrary, our previous results demonstrated that Id4 acts as a potential tumor suppressor in prostate cancer. In the present study, we extend these observations and demonstrate that Id4 is down-regulated in prostate cancer due to promoter hypermethylation. We used prostate cancer tissue microarrays to investigate Id4 expression. Methylation specific PCR on bisulfite treated DNA was used to determine methylation status of Id4 promoter in laser capture micro-dissected normal, stroma and prostate cancer regions. High Id4 expression was observed in the normal prostate epithelial cells. In prostate cancer, a stage-dependent decrease in Id4 expression was observed with majority of high grade cancers showing no Id4 expression. Furthermore, Id4 expression progressively decreased in prostate cancer cell line LNCaP and with no expression in androgen-insensitive LNCaP-C81 cell line. Conversely, Id4 promoter hypermethylation increased in LNCaP-C81 cells suggesting epigenetic silencing. In prostate cancer samples, loss of Id4 expression was also associated with promoter hypermethylation. Our results demonstrate loss of Id4 expression in prostate cancer due to promoter hypermethylation. The data strongly support the role of Id4 as a tumor suppressor.

Indexed as

Gene Expression Regulation, NeoplasticGene SilencingGenes, Tumor SuppressorCell DifferentiationCell Line, TumorDNA MethylationDown-RegulationHumansInhibitor of Differentiation ProteinsMalePromoter Regions, GeneticProstatic NeoplasmsTumor Suppressor ProteinsID4 protein, humanInhibitor of Differentiation ProteinsTumor Suppressor ProteinsEpigeneticsId4prostate cancer

Identifiers

PMID23342267
PMCPMC3544455
OpenAlexW2003541059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.