Evidence map›Paper›PMID 23341974›Full record

ArticlePloS one2013

Incomplete lineage sorting is common in extant gibbon genera.

Jeffrey D Wall, Sung K Kim, Francesca Luca, Lucia Carbone, Alan R Mootnick, Pieter J de Jong, Anna Di Rienzo

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Unraveling recombination rate evolution using ancestral recombination maps.BioEssays : news and reviews in molecular, cellular and developmental biology · 2014
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jeffrey D WallInstitute for Human Genetics, University of California San Francisco, San Francisco, California, United States of America. wallj@humgen.ucsf.edu
Sung K Kim
Francesca Luca
Lucia Carbone
Alan R Mootnick
Pieter J de Jong
Anna Di Rienzo

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Genomic Patterns of Polymorphism in PrimatesR01HG005226 · NHGRI · UNIVERSITY OF ARIZONA · PI HAMMER, MICHAEL F, WALL, JEFFREY D · 2010 to 2012
$1.7M
Local Adaptations in HumansR01GM079558 · NIGMS · UNIVERSITY OF CHICAGO · PI DI RIENZO, ANNA · 2007 to 2010
$1.2M
NHGRI NIH HHS R01 HG005226NIGMS NIH HHS R01 GM079558NIH HHS OD011092NIH HHS P51 OD011092
6 · The paper itself

Abstract

We sequenced reduced representation libraries by means of Illumina technology to generate over 1.5 Mb of orthologous sequence from a representative of each of the four extant gibbon genera (Nomascus, Hylobates, Symphalangus, and Hoolock). We used these data to assess the evolutionary relationships between the genera by evaluating the likelihoods of all possible bifurcating trees involving the four taxa. Our analyses provide weak support for a tree with Nomascus and Hylobates as sister taxa and with Hoolock and Symphalangus as sister taxa, though bootstrap resampling suggests that other phylogenetic scenarios are also possible. This uncertainty is due to short internal branch lengths and extensive incomplete lineage sorting across taxa. The true phylogenetic relationships among gibbon genera will likely require a more extensive whole-genome sequence analysis.

Indexed as

Evolution, MolecularPhylogenyAnimalsExtinction, BiologicalFemaleGenomicsHumansHylobatesMalePan troglodytesSequence Analysis, DNASpecies Specificity

Identifiers

PMID23341974
PMCPMC3544895

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.