Evidence map›Paper›PMID 23341772›Full record

ArticlePLoS genetics2013

E. coli Fis protein insulates the cbpA gene from uncontrolled transcription.

Kiran Chintakayala, Shivani S Singh, Amanda E Rossiter, Rajesh Shahapure, Remus T Dame, David C Grainger

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  4. Review
  5. An unexpected abundance of bidirectional promoters withinMicrobiology (Reading, England) · 2023
    Article
  6. Genome-wide promoter assembly inGenome research · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kiran ChintakayalaInstitute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Shivani S Singh
Amanda E Rossiter
Rajesh Shahapure
Remus T Dame
David C Grainger
University of Birmingham · GBLeiden University · NL

Funding

Biotechnology and Biological Sciences Research Council BB/H010289/1Wellcome Trust
6 · The paper itself

Abstract

The Escherichia coli curved DNA binding protein A (CbpA) is a poorly characterised nucleoid associated factor and co-chaperone. It is expressed at high levels as cells enter stationary phase. Using genetics, biochemistry, and genomics, we have examined regulation of, and DNA binding by, CbpA. We show that Fis, the dominant growth-phase nucleoid protein, prevents CbpA expression in growing cells. Regulation by Fis involves an unusual "insulation" mechanism. Thus, Fis protects cbpA from the effects of a distal promoter, located in an adjacent gene. In stationary phase, when Fis levels are low, CbpA binds the E. coli chromosome with a preference for the intrinsically curved Ter macrodomain. Disruption of the cbpA gene prompts dramatic changes in DNA topology. Thus, our work identifies a novel role for Fis and incorporates CbpA into the growing network of factors that mediate bacterial chromosome structure.

Indexed as

Carrier ProteinsChromosomes, BacterialEscherichia coliEscherichia coli ProteinsFactor For Inversion Stimulation ProteinDNA, BacterialDNA-Binding ProteinsGene Expression Regulation, BacterialMolecular ChaperonesPromoter Regions, GeneticTranscription, GeneticCarrier ProteinsCbpM protein, E coliDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsFactor For Inversion Stimulation ProteinFis protein, E coliMolecular Chaperones

Identifiers

PMID23341772
PMCPMC3547828
OpenAlexW1979843975

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.