Evidence map›Paper›PMID 23341615›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Structure of ADP-aluminium fluoride-stabilized protochlorophyllide oxidoreductase complex.

Jürgen Moser, Christiane Lange, Joern Krausze, Johannes Rebelein, Wolf-Dieter Schubert, Markus W Ribbe, Dirk W Heinz, Dieter Jahn

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Improving macromolecular structure refinement with metal-coordination restraints.Acta crystallographica. Section D, Structural biology · 2024
    Article
  7. Article
  8. Structural basis for coupled ATP-driven electron transfer in the double-cubane cluster protein.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Review
  11. Article
  12. Chimeric Interaction of Nitrogenase-Like Reductases with the MoFe Protein of Nitrogenase.Chembiochem : a European journal of chemical biology · 2020
    Article
  13. Biosynthesis of the modified tetrapyrroles-the pigments of life.The Journal of biological chemistry · 2020
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. ATP-dependent substrate reduction at an [FeProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Jürgen MoserInstitut für Mikrobiologie, Technische Universität Braunschweig, D-38106 Braunschweig, Germany. j.moser@tu-bs.de
Christiane Lange
Joern Krausze
Johannes Rebelein
Wolf-Dieter Schubert
Markus W Ribbe
Dirk W Heinz
Dieter Jahn
Technische Universität Braunschweig · DEHelmholtz Centre for Infection Research · DEUniversity of California, Irvine · USUniversity of the Western Cape · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosynthesis uses chlorophylls for the conversion of light into chemical energy, the driving force of life on Earth. During chlorophyll biosynthesis in photosynthetic bacteria, cyanobacteria, green algae and gymnosperms, dark-operative protochlorophyllide oxidoreductase (DPOR), a nitrogenase-like metalloenzyme, catalyzes the chemically challenging two-electron reduction of the fully conjugated ring system of protochlorophyllide a. The reduction of the C-17=C-18 double bond results in the characteristic ring architecture of all chlorophylls, thereby altering the absorption properties of the molecule and providing the basis for light-capturing and energy-transduction processes of photosynthesis. We report the X-ray crystallographic structure of the substrate-bound, ADP-aluminium fluoride-stabilized (ADP·AlF(3)-stabilized) transition state complex between the DPOR components L(2) and (NB)(2) from the marine cyanobacterium Prochlorococcus marinus. Our analysis permits a thorough investigation of the dynamic interplay between L(2) and (NB)(2). Upon complex formation, substantial ATP-dependent conformational rearrangements of L(2) trigger the protein-protein interactions with (NB)(2) as well as the electron transduction via redox-active [4Fe-4S] clusters. We also present the identification of artificial "small-molecule substrates" of DPOR in correlation with those of nitrogenase. The catalytic differences and similarities between DPOR and nitrogenase have broad implications for the energy transduction mechanism of related multiprotein complexes that are involved in the reduction of chemically stable double and/or triple bonds.

Indexed as

Adenosine DiphosphateAluminum CompoundsAmino Acid SequenceBacterial ProteinsCrystallography, X-RayEnzyme StabilityFluoridesMacromolecular SubstancesModels, MolecularMolecular Sequence DataMolecular StructureMutagenesis, Site-DirectedOxidoreductases Acting on CH-CH Group DonorsProchlorococcusProtein ConformationProtein SubunitsAdenosine DiphosphateAluminum Compoundsaluminum fluorideBacterial ProteinsFluoridesMacromolecular SubstancesOxidoreductases Acting on CH-CH Group DonorsProtein SubunitsProtochlorophyllideprotochlorophyllide reductase

Identifiers

PMID23341615
PMCPMC3568340
OpenAlexW2082788097

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.