Evidence map›Paper›PMID 23341454›Full record

ArticleThe Journal of biological chemistry2013

Small angle X-ray scattering analysis of Clostridium thermocellum cellulosome N-terminal complexes reveals a highly dynamic structure.

Mark A Currie, Kate Cameron, Fernando M V Dias, Holly L Spencer, Edward A Bayer, Carlos M G A Fontes, Steven P Smith, Zongchao Jia

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

  1. Mapping the deformability of natural and designed cellulosomes in solution.Biotechnology for biofuels and bioproducts · 2022
    Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Dynamic interactions of type I cohesin modules fine-tune the structure of the cellulosome ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Mark A CurrieDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Kate CameronCentro Interdisciplinar de Investigacao em Sanidade Animal, Faculdade de Medincina Veterinaria, Universidade Tecnica de Lisboa, 1300-477 Lisbon, Portugal.
Fernando M V DiasCentro Interdisciplinar de Investigacao em Sanidade Animal, Faculdade de Medincina Veterinaria, Universidade Tecnica de Lisboa, 1300-477 Lisbon, Portugal.
Holly L SpencerDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Edward A BayerDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel.
Carlos M G A FontesCentro Interdisciplinar de Investigacao em Sanidade Animal, Faculdade de Medincina Veterinaria, Universidade Tecnica de Lisboa, 1300-477 Lisbon, Portugal.
Steven P SmithDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada; Protein Function Discovery Group, Queen's University, Kingston, Ontario K7L 3N6, Canada. Electronic address: steven.smith@queensu.ca.
Zongchao JiaDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada; Protein Function Discovery Group, Queen's University, Kingston, Ontario K7L 3N6, Canada. Electronic address: jia@queensu.ca.
Queen's University · CAWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium thermocellum produces the prototypical cellulosome, a large multienzyme complex that efficiently hydrolyzes plant cell wall polysaccharides into fermentable sugars. This ability has garnered great interest in its potential application in biofuel production. The core non-catalytic scaffoldin subunit, CipA, bears nine type I cohesin modules that interact with the type I dockerin modules of secreted hydrolytic enzymes and promotes catalytic synergy. Because the large size and flexibility of the cellulosome preclude structural determination by traditional means, the structural basis of this synergy remains unclear. Small angle x-ray scattering has been successfully applied to the study of flexible proteins. Here, we used small angle x-ray scattering to determine the solution structure and to analyze the conformational flexibility of two overlapping N-terminal cellulosomal scaffoldin fragments comprising two type I cohesin modules and the cellulose-specific carbohydrate-binding module from CipA in complex with Cel8A cellulases. The pair distribution functions, ab initio envelopes, and rigid body models generated for these two complexes reveal extended structures. These two N-terminal cellulosomal fragments are highly dynamic and display no preference for extended or compact conformations. Overall, our work reveals structural and dynamic features of the N terminus of the CipA scaffoldin that may aid in cellulosome substrate recognition and binding.

Indexed as

Acetivibrio thermocellusBacterial ProteinsCarrier ProteinsCellulaseCrystallography, X-RayModels, MolecularMolecular ConformationMultienzyme ComplexesProtein BindingProtein ConformationProtein Structure, TertiaryRecombinant ProteinsScattering, RadiationScattering, Small AngleSubstrate SpecificityX-RaysBacterial ProteinsCarrier ProteinsCellulasecellulose binding protein A, Clostridium cellulovoranscellulosome, ClostridiumMultienzyme ComplexesRecombinant Proteins

Identifiers

PMID23341454
PMCPMC3597834
OpenAlexW1978560084

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.