ArticleThe Plant cell2013
Organ evolution in angiosperms driven by correlated divergences of gene sequences and expression patterns.
Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 38 citations in OpenAlex.
- Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii.BMC biology · 2023Article
- Evolution of isoform-level gene expression patterns across tissues during lotus species divergence.The Plant journal : for cell and molecular biology · 2022Article
- Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora.Molecular biology and evolution · 2022Article
- A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies.Nucleic acids research · 2021Article
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- It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.Briefings in bioinformatics · 2019Review
- Evolution of Alternative Splicing in Eudicots.Frontiers in plant science · 2019Article
- Plant organ evolution revealed by phylotranscriptomics in Arabidopsis thaliana.Scientific reports · 2017Article
- Pan-organ transcriptome variation across 21 cancer types.Oncotarget · 2017Article
- Expression Variations of miRNAs and mRNAs in Rice (Oryza sativa).Genome biology and evolution · 2016Article
- Illuminating a plant's tissue-specific metabolic diversity using computational metabolomics and information theory.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes.BMC genomics · 2015Article
- Interspecific Differential Expression Analysis of RNA-Seq Data Yields Insight into Life Cycle Variation in Hydractiniid Hydrozoans.Genome biology and evolution · 2015Article
- Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures.The New phytologist · 2015Article
- Article
- Functional similarity and molecular divergence of a novel reproductive transcriptome in two male-pregnant Syngnathus pipefish species.Ecology and evolution · 2013Article
- Gene expression in angiosperm organ evolution.The Plant cell · 2013Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The evolution of a species involves changes in its genome and its transcriptome. Divergence in expression patterns may be more important than divergence in sequences for determining phenotypic changes, particularly among closely related species. We examined the relationships between organ evolution, sequence evolution, and expression evolution in Arabidopsis thaliana, rice (Oryza sativa), and maize (Zea mays). We found correlated divergence of gene sequences and expression patterns, with distinct divergence rates that depend on the organ types in which a gene is expressed. For instance, genes specifically expressed in reproductive organs (i.e., stamen) evolve more quickly than those specifically expressed in vegetative organs (e.g., root). The different rates in organ evolution may be due to different degrees of functional constraint associated with the different physiological functions of plant organs. Additionally, the evolutionary rate of a gene sequence is correlated with the breadth of its expression in terms of the number of tissues, the number of coregulation modules, and the number of species in which the gene is expressed, as well as the number of genes with which it may interact. This linkage supports the hypothesis that constitutively expressed genes may experience higher levels of functional constraint accumulated from multiple tissues than do tissue-specific genes.
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