Evidence map›Paper›PMID 23337890›Full record

ArticleThe Journal of investigative dermatology2013

Propionibacterium acnes strain populations in the human skin microbiome associated with acne.

Sorel Fitz-Gibbon, Shuta Tomida, Bor-Han Chiu, Lin Nguyen, Christine Du, Minghsun Liu, David Elashoff, Marie C Erfe, Anya Loncaric, Jenny Kim and 6 more

2 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 365 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
365citing papers in PubMed, 1 pooled it
44.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03450369 phase1completednot on this mapstarted 2018, after this paper: background citation

A Phase 1B Dose Escalating Study of the Safety, Short-Term Engraftment and Action of a Singly-Applied NB01 in Adults With Moderate Acne

TypeinterventionalSponsorNaked Biome, Inc.Ran2018 to 2018Enrolled10ConditionsAcne VulgarisArmsNB01
NCT03709654 phase1completednot on this mapstarted 2018, after this paper: background citation

A Multicenter, Randomized, Double-Blind, Vehicle-Controlled Phase 1B Study of the Safety, Short-Term Engraftment and Action of NB01 in Adults With Moderate Acne

TypeinterventionalSponsorNaked Biome, Inc.Ran2018 to 2019Enrolled36ConditionsAcne VulgarisArmsNB01, Vehicle Control
3 · Its place in the literature

Who cites it

365 citing papers in PubMed, 1 synthesis or guideline pooled it, 740 citations in OpenAlex.

  1. Acne and the cutaneous microbiome: A systematic review of mechanisms and implications for treatments.Journal of the European Academy of Dermatology and Venereology : JEADV · 2025
    Pooled it
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  16. Comparative pangenomics of theFrontiers in microbiology · 2026
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  19. The forehead and glabella show pronouncedFrontiers in microbiology · 2026
    Article
  20. Review

305 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Sorel Fitz-GibbonDepartment of Molecular and Medical Pharmacology, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Shuta Tomida
Bor-Han Chiu
Lin Nguyen
Christine Du
Minghsun Liu
David Elashoff
Marie C Erfe
Anya Loncaric
Jenny Kim
Robert L Modlin
Jeff F Miller
Erica Sodergren
Noah Craft
George M Weinstock
Huiying Li
University of California, Los Angeles · USInstitute for Molecular Medicine · USThe Lundquist Institute · USWashington University in St. Louis · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Sequencing the Human MicrobiomeU54HG004968 · NHGRI · WASHINGTON UNIVERSITY · PI WILSON, RICHARD K. · 2009 to 2012
$16.7M
Metagenomic study of the human skin microbiome associated with acneUH2AR057503 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LI, HUIYING · 2009 to 2010
$1.2M
NCATS NIH HHS UL1 TR000124NHGRI NIH HHS U54 HG004968NHGRI NIH HHS U54HG004968NIAMS NIH HHS UH2 AR057503NIAMS NIH HHS UH2AR057503
6 · The paper itself

Abstract

The human skin microbiome has important roles in skin health and disease. However, bacterial population structure and diversity at the strain level is poorly understood. We compared the skin microbiome at the strain level and genome level of Propionibacterium acnes, a dominant skin commensal, between 49 acne patients and 52 healthy individuals by sampling the pilosebaceous units on their noses. Metagenomic analysis demonstrated that although the relative abundances of P. acnes were similar, the strain population structures were significantly different in the two cohorts. Certain strains were highly associated with acne, and other strains were enriched in healthy skin. By sequencing 66 previously unreported P. acnes strains and comparing 71 P. acnes genomes, we identified potential genetic determinants of various P. acnes strains in association with acne or health. Our analysis suggests that acquired DNA sequences and bacterial immune elements may have roles in determining virulence properties of P. acnes strains, and some could be future targets for therapeutic interventions. This study demonstrates a previously unreported paradigm of commensal strain populations that could explain the pathogenesis of human diseases. It underscores the importance of strain-level analysis of the human microbiome to define the role of commensals in health and disease.

Indexed as

MetagenomeAcne VulgarisAdultDNA, BacterialFemaleGenomicsGram-Positive Bacterial InfectionsHumansMalePropionibacterium acnesRibotypingRNA, BacterialRNA, RibosomalSebaceous GlandsSkinYoung AdultDNA, BacterialRNA, BacterialRNA, Ribosomal

Identifiers

PMID23337890
PMCPMC3745799
OpenAlexW2015156802

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.