Evidence map›Paper›PMID 23335779›Full record

ArticleApplied and environmental microbiology2013

Arabinose induces pellicle formation by Vibrio fischeri.

Karen L Visick, Kevin P Quirke, Sheila M McEwen

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. A prototrophic suppressor of aJournal of bacteriology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Porous Pellicle Formation of a Filamentous Bacterium,Applied and environmental microbiology · 2022
    Article
  8. Isocitrate dehydrogenase of Bacillus cereus is involved in biofilm formation.World journal of microbiology & biotechnology · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Cellulose effects on morphology and elasticity ofNPJ biofilms and microbiomes · 2016
    Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Karen L VisickDepartment of Microbiology and Immunology, Loyola University Medical Center, Maywood, Illinois, USA. kvisick@lumc.edu
Kevin P Quirke
Sheila M McEwen
Loyola University Medical Center · US

Funding

REQUIREMENTS FOR BACTERIAL COLONIZATION OF ANIMAL TISSUER01GM059690 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI VISICK, KAREN L · 2000 to 2013
$3.4M
NIGMS NIH HHS R01 GM059690NIGMS NIH HHS R01 GM59690
6 · The paper itself

Abstract

Biofilms are multicellular communities of bacteria attached to a surface and embedded in a protective matrix. In many cases, the signals that induce biofilm formation are unknown. Here, we report that biofilm formation by the marine bacterium Vibrio fischeri can be induced by the addition of arabinose to LBS (Luria-Bertani-salt), a tryptone-based medium. Growth of cells in the presence of 0.2% arabinose, but not other sugars, induced the production of a pellicle at the air/liquid interfaces of static cultures. V. fischeri failed to grow on arabinose as the sole carbon source, suggesting that pellicle production did not occur as a result of increased growth, but experiments using the acid/base indicator phenol red suggested that V. fischeri may partially metabolize arabinose. Pellicle production was independent of the syp polysaccharide locus but was altered upon disruption of the bcs cellulose locus. Through a screen for mutants defective for pellicle production, we found that loss of motility disrupted the formation of the arabinose-induced pellicle. Among the ∼20 mutants that retained motility were strains with insertions in a putative msh pilus locus and a strain with a defect in yidK, which is involved in galactose catabolism. Mutants with the msh gene disrupted grew poorly in the presence of arabinose, while the yidK mutant appeared to be "blind" to the presence of arabinose. Finally, arabinose impaired symbiotic colonization by V. fischeri. This work thus identifies a novel signal and new pathways involved in control of biofilm formation by V. fischeri.

Indexed as

Aliivibrio fischeriArabinoseBiofilmsCulture MediaGenes, BacterialLocomotionMutagenesis, InsertionalSymbiosisArabinoseCulture Media

Identifiers

PMID23335779
PMCPMC3592253
OpenAlexW2079977238

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.