Evidence map›Paper›PMID 23334931›Full record

ArticleFolia microbiologica2013

Candidate target genes for the Saccharomyces cerevisiae transcription factor, Yap2.

Seo Young Bang, Jeong Hoon Kim, Phil Young Lee, Seung-Wook Chi, Sayeon Cho, Gwan-Su Yi, Pyung Keun Myung, Byoung Chul Park, Kwang-Hee Bae, Sung Goo Park

Abstract read
PubMed Publisher
In one paragraph

Article in Folia microbiologica, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Seo Young BangMedical Proteomics Research Center, KRIBB, Daejeon, 305-806, Republic of Korea.
Jeong Hoon Kim
Phil Young Lee
Seung-Wook Chi
Sayeon Cho
Gwan-Su Yi
Pyung Keun Myung
Byoung Chul Park
Kwang-Hee Bae
Sung Goo Park
Korea Research Institute of Bioscience and Biotechnology · KRChung-Ang University · KRChungnam National University · KRKorea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Saccharomyces cerevisiae, the Yap family of basic leucine zipper (bZip) proteins contains eight members. The Yap family proteins are implicated in a variety of stress responses; among these proteins, Yap1 acts as a major regulator of oxidative stress responses. However, the functional roles of the remaining Yap family members are poorly understood. To elucidate the function of Yap2, we mined candidate target genes of Yap2 by proteomic analysis. Among the identified genes, FRM2 was previously identified as a target gene of Yap2, which confirmed the validity of our screening method. YNL134C and YDL124W were also identified as candidate Yap2 target genes. These genes were upregulated in strains overexpressing Yap2 and possess Yap2 target sequences in their promoter regions. Furthermore, chromatin immunoprecipitation assays showed that YNL134C and YDL124W have Yap2 binding motif. These data will help to elucidate the functional role of Yap2.

Indexed as

Gene Expression Regulation, FungalGenes, FungalAlcohol OxidoreductasesBinding SitesChromatin ImmunoprecipitationDNA, FungalOxidoreductasesPromoter Regions, GeneticProtein BindingProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsAlcohol OxidoreductasesCAD1 protein, S cerevisiaeDNA, FungalOxidoreductasesSaccharomyces cerevisiae ProteinsTranscription FactorsYDL124W protein, S cerevisiaeYNL134C protein, S cerevisiae

Identifiers

PMID23334931
OpenAlexW2040891928

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.