Evidence map›Paper›PMID 23334788›Full record

ArticleNature immunology2013

Transcriptional reprogramming of mature CD4⁺ helper T cells generates distinct MHC class II-restricted cytotoxic T lymphocytes.

Daniel Mucida, Mohammad Mushtaq Husain, Sawako Muroi, Femke van Wijk, Ryo Shinnakasu, Yoshinori Naoe, Bernardo Sgarbi Reis, Yujun Huang, Florence Lambolez, Michael Docherty and 15 more

Abstract read
In one paragraph

Article in Nature immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 240 papers.

0numbers the graph read from it
0cells of the map it votes in
240citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

240 citing papers in PubMed, 372 citations in OpenAlex.

  1. Review
  2. SATB1 preserves CD4Life science alliance · 2026
    Article
  3. Targeting BCL9/BCL9L enhances CD4Acta pharmacologica Sinica · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Protein-dependent CD4iScience · 2026
    Article
  8. Article
  9. Cytomegalovirus Drives the Development of Cytotoxic CD4Neurology(R) neuroimmunology & neuroinflammation · 2026
    Article
  10. Contextualizing TNature reviews. Immunology · 2026
    Review
  11. Article
  12. Cytotoxic CD4Signal transduction and targeted therapy · 2026
    Review
  13. Article
  14. Article
  15. Review
  16. The double-positive cells in the tumor microenvironment.Journal of translational internal medicine · 2026
    Article
  17. Review
  18. Review
  19. Article
  20. Article

180 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 3 countries.

Daniel MucidaDivision of Developmental Immunology, La Jolla Institute for Allergy & Immunology, La Jolla, California, USA.
Mohammad Mushtaq Husain
Sawako Muroi
Femke van Wijk
Ryo Shinnakasu
Yoshinori Naoe
Bernardo Sgarbi Reis
Yujun Huang
Florence Lambolez
Michael Docherty
Antoine Attinger
Jr-Wen Shui
Gisen Kim
Christopher J Lena
Shinya Sakaguchi
Chizuko Miyamoto
Peng Wang
Koji Atarashi
Yunji Park
Toshinori Nakayama
Kenya Honda
Wilfried Ellmeier
Mitchell Kronenberg
Ichiro Taniuchi
Hilde Cheroutre
La Jolla Institute for Immunology · USRIKEN Center for Integrative Medical Sciences · JPMedical University of Vienna · ATThe University of Tokyo · JPChiba University · JPRockefeller University · US

Funding

Using polygenic scores to enhance both variant discovery, and understanding of functional consequences of genetic variation in IBD.P01DK046763 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI TARGAN, STEPHAN R. · 1992 to 2020
$31.1M
INTESTINAL REGULATION OF ThPOK EXPRESSION AND CD4 HELPER T CELL FUNCTIONR01DK093674 · NIDDK · ROCKEFELLER UNIVERSITY · PI Daniel S Mucida · 2013 to 2026
$7.0M
Mucosal immune regulation by CD8aa+ cellsR01AI050265 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CHEROUTRE, HILDE MC · 2001 to 2015
$5.5M
Uncovering the Missing Link that Determines Susceptibility to AutoimmunityDP1OD006433 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CHEROUTRE, HILDE MC · 2009 to 2011
$2.8M
Uncovering the Missing Link that Determines Susceptibility to AutoimmunityDP1GM105384 · NIGMS · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CHEROUTRE, HILDE MC · 2012 to 2013
$1.8M
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
The role of HVEM in inflammation and T cell FunctionF32DK082249 · NIDDK · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SHUI, JRWEN · 2008 to 2010
$127k
NIAID NIH HHS R01 AI050265NIDDK NIH HHS F32 DK082249NIDDK NIH HHS P01 DK046763NIDDK NIH HHS P01 DK46763NIDDK NIH HHS R01 DK093674NIGMS NIH HHS DP1 GM105384NIH HHS DP1 OD006433
6 · The paper itself

Abstract

TCRαβ thymocytes differentiate into either CD8αβ(+) cytotoxic T lymphocytes or CD4(+) helper T cells. This functional dichotomy is controlled by key transcription factors, including the helper T cell master regulator ThPOK, which suppresses the cytolytic program in major histocompatibility complex (MHC) class II-restricted CD4(+) thymocytes. ThPOK continues to repress genes of the CD8 lineage in mature CD4(+) T cells, even as they differentiate into effector helper T cell subsets. Here we found that the helper T cell fate was not fixed and that mature, antigen-stimulated CD4(+) T cells terminated expression of the gene encoding ThPOK and reactivated genes of the CD8 lineage. This unexpected plasticity resulted in the post-thymic termination of the helper T cell program and the functional differentiation of distinct MHC class II-restricted CD4(+) cytotoxic T lymphocytes.

Indexed as

AnimalsCell DifferentiationCell LineageCitrobacter rodentiumHistocompatibility Antigens Class IIHomeodomain ProteinsInterleukin-7MiceMice, Inbred C57BLMice, KnockoutThymocytesT-Lymphocytes, CytotoxicT-Lymphocytes, Helper-InducerTranscription FactorsHistocompatibility Antigens Class IIHomeodomain ProteinsInterleukin-7RAG-1 proteinTranscription FactorsZbtb7b protein, mouse

Identifiers

PMID23334788
PMCPMC3581083
OpenAlexW2046612588

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.