Evidence map›Paper›PMID 23334667›Full record

ArticleNature genetics2013

Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations.

Priscilla K Brastianos, Peleg M Horowitz, Sandro Santagata, Robert T Jones, Aaron McKenna, Gad Getz, Keith L Ligon, Emanuele Palescandolo, Paul Van Hummelen, Matthew D Ducar and 8 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 351 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
351citing papers in PubMed, 6 pooled it
32.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

351 citing papers in PubMed, 6 syntheses or guidelines pooled it, 643 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Guideline
  7. Trial
  8. Alliance A071401: Phase II Trial of Focal Adhesion Kinase Inhibition in Meningiomas With SomaticJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
    Trial
  9. Trial
  10. Review
  11. Article
  12. Observational
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
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291 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Priscilla K BrastianosDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Peleg M Horowitz
Sandro Santagata
Robert T Jones
Aaron McKenna
Gad Getz
Keith L Ligon
Emanuele Palescandolo
Paul Van Hummelen
Matthew D Ducar
Alina Raza
Ashwini Sunkavalli
Laura E Macconaill
Anat O Stemmer-Rachamimov
David N Louis
William C Hahn
Ian F Dunn
Rameen Beroukhim
Dana-Farber Cancer Institute · USBroad Institute · USBrigham and Women's Hospital · USMassachusetts General Hospital · US

Funding

Training Program in Nervous System TumorsK12CA090354 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI PLOTKIN, SCOTT R · 2001 to 2025
$16.3M
Heat Shock Directed Drug Discovery For The Treatment Of GliomasK08NS064168 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI SANTAGATA, SANDRO · 2008 to 2012
$900k
High-resolution genome-wide mapping of structural mutations in prostate cancerK08CA122833 · NCI · DANA-FARBER CANCER INST · PI BEROUKHIM, RAMEEN · 2007 to 2011
$697k
NCI NIH HHS K08 CA122833NCI NIH HHS K12 CA090354NCI NIH HHS K12 CA090354-11NINDS NIH HHS K08 NS064168
6 · The paper itself

Abstract

Meningiomas are the most common primary nervous system tumor. The tumor suppressor NF2 is disrupted in approximately half of all meningiomas, but the complete spectrum of genetic changes remains undefined. We performed whole-genome or whole-exome sequencing on 17 meningiomas and focused sequencing on an additional 48 tumors to identify and validate somatic genetic alterations. Most meningiomas had simple genomes, with fewer mutations, rearrangements and copy-number alterations than reported in other tumors in adults. However, several meningiomas harbored more complex patterns of copy-number changes and rearrangements, including one tumor with chromothripsis. We confirmed focal NF2 inactivation in 43% of tumors and found alterations in epigenetic modifiers in an additional 8% of tumors. A subset of meningiomas lacking NF2 alterations harbored recurrent oncogenic mutations in AKT1 (p.Glu17Lys) and SMO (p.Trp535Leu) and exhibited immunohistochemical evidence of activation of these pathways. These mutations were present in therapeutically challenging tumors of the skull base and higher grade. These results begin to define the spectrum of genetic alterations in meningiomas and identify potential therapeutic targets.

Indexed as

Base SequenceBrain NeoplasmsGenomicsHumansMeningiomaMutationNeurofibromin 2Proto-Oncogene Proteins c-aktReceptors, G-Protein-CoupledSmoothened ReceptorAKT1 protein, humanNeurofibromin 2Proto-Oncogene Proteins c-aktReceptors, G-Protein-CoupledSmoothened ReceptorSMO protein, human

Identifiers

PMID23334667
PMCPMC3739288
OpenAlexW2154170543

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.