Evidence map›Paper›PMID 23334589›Full record

ArticleCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology2013

Targetome profiling, pathway analysis and genetic association study implicate miR-202 in lymphomagenesis.

Aaron E Hoffman, Ran Liu, Alan Fu, Tongzhang Zheng, Frank Slack, Yong Zhu

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

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  3. The microRNA-202 as a Diagnostic Biomarker and a Potential Tumor Suppressor.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Aaron E HoffmanCorresponding Author: Yong Zhu, Yale School of Public Health, Yale School of Medicine, New Haven, CT 06520, USA. yong.zhu@yale.edu
Ran Liu
Alan Fu
Tongzhang Zheng
Frank Slack
Yong Zhu
Tulane University · USYale University · US

Funding

Molecular epidemiology/functional analysis of microRNAs in Non-Hodgkin's lymphomaR01CA154653 · NCI · YALE UNIVERSITY · PI ZHU, YONG · 2011 to 2014
$1.3M
Database of Functional SNPs in Cancer-Related Environmentally Responsive GenesR01CA122676 · NCI · YALE UNIVERSITY · PI ZHU, YONG · 2007 to 2009
$848k
HAIR DYE USE AND RISK OF NONHODGKINS LYMPHOMAR01CA062006 · NCI · YALE UNIVERSITY · PI ZHENG, TONGZHANG · 1995 to 2000
$125k
NCI NIH HHS CA122676NCI NIH HHS CA154653NCI NIH HHS R01 CA062006NCI NIH HHS R01 CA122676NCI NIH HHS R01 CA154653
6 · The paper itself

Abstract

backgroundmiRNAs have been implicated in numerous tumorigenic pathways, and previous studies have associated miR-202 dysregulation with various cancer types, including follicular lymphoma.

methodsThe miR-202 targetome was identified by ribonucleoprotein immunoprecipitation-microarray (RIP-Chip), and functional interactions among identified targets were investigated using the Ingenuity Pathway Analysis tool. We also conducted a population-based genetic association study of a polymorphism within the miR-202 stem-loop sequence and risk of non-Hodgkin lymphoma. In vitro gain-of-function experiments were further conducted to elucidate the functional significance of the variant.

resultsA total of 141 potential members of the miR-202 targetome were identified by a transcriptome-wide RIP-Chip assay. Functional interactions among identified targets suggested that miR-202-regulated genes are involved in biologic pathways relevant for hematologic function and cancer. Consistent with this, a genetic association analysis using human blood samples revealed a significant association between a germline mutation (rs12355840) in the miR-202 precursor sequence and follicular lymphoma risk. An in vitro functional assay further showed that the variant allele resulted in diminished miR-202 levels, possibly by altering precursor-processing efficiency.

conclusionsTaken together, our findings suggest that miR-202 is involved in follicular lymphomagenesis. IMPACT: These findings implicate miR-202 as a potential tumor suppressor in follicular lymphoma and warrant the investigation of miR-202 as a novel biomarker of follicular lymphoma risk.

Indexed as

Gene Expression ProfilingGenetic Association StudiesSignal TransductionAgedBase PairingCase-Control StudiesDNA PrimersFemaleHumansImmunoprecipitationInverted Repeat SequencesLymphoma, Non-HodgkinMicroRNAsOligonucleotide Array Sequence AnalysisPolymorphism, GeneticDNA PrimersMicroRNAsMIRN202 microRNA, human

Identifiers

PMID23334589
PMCPMC3905613
OpenAlexW2160024501

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.