Evidence map›Paper›PMID 23334578›Full record

ArticleNature neuroscience2013

Molecular architecture of the chick vestibular hair bundle.

Jung-Bum Shin, Jocelyn F Krey, Ahmed Hassan, Zoltan Metlagel, Andrew N Tauscher, James M Pagana, Nicholas E Sherman, Erin D Jeffery, Kateri J Spinelli, Hongyu Zhao and 5 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed.

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  11. Structure and organization of full-length epidermal growth factor receptor in extracellular vesicles by cryo-electron tomography.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  18. The Exoproteome and Surfaceome of ToxigenicJournal of proteome research · 2025
    Article
  19. Growth physiology, genomics, and proteomics ofFrontiers in microbiology · 2025
    Article
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jung-Bum ShinDepartment of Neuroscience, University of Virginia, Charlottesville, Virginia, USA.
Jocelyn F Krey
Ahmed Hassan
Zoltan Metlagel
Andrew N Tauscher
James M Pagana
Nicholas E Sherman
Erin D Jeffery
Kateri J Spinelli
Hongyu Zhao
Phillip A Wilmarth
Dongseok Choi
Larry L David
Manfred Auer
Peter G Barr-Gillespie

Funding

TUBULIN STRUCTURE BY ELECTRON CRYSTALLOGRAPHYP01GM051487 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CATE, JAMIE H · 1994 to 2018
$27.6M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Hair-Bundle ProteinsR01DC002368 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Peter Gordon Barr-Gillespie · 1994 to 2026
$11.3M
PORTLAND AREA COMMUNICATION RESEARCH CORE CENTERP30DC005983 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI NUTTALL, ALFRED L · 2003 to 2017
$9.0M
Hair Bundle Structure and DynamicsR01DC011034 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2010 to 2024
$6.4M
PROTEIN CLEAVAGE SITES IN EXPERIMENTAL CATARACTOUS LENSR01EY007755 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 1995 to 2014
$3.6M
Dynamics of Hair Bundle ProteinsR00DC009412 · NIDCD · UNIVERSITY OF VIRGINIA · PI SHIN, JUNG-BUM · 2010 to 2012
$725k
Quantifying Hair Bundle ComponentsR21DC008801 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2007 to 2008
$442k
Laser Scanning Confocal MicroscopeS10RR025440 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2009 to 2009
$368k
Deltavision RT Image Restoration System for Established Research Core FacilityS10RR023432 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI KELLER, THOMAS J · 2007 to 2007
$365k
NCRR NIH HHS P41 RR017573NCRR NIH HHS RR017573NCRR NIH HHS S10 RR023432NCRR NIH HHS S10 RR025440NEI NIH HHS P30 EY010572NEI NIH HHS P30 EY10572NEI NIH HHS R01 EY007755NIDCD NIH HHS F32 DC012455NIDCD NIH HHS K99 DC009412NIDCD NIH HHS K99/R00 DC009412NIDCD NIH HHS P30 DC005983NIDCD NIH HHS R00 DC009412NIDCD NIH HHS R01 DC002368NIDCD NIH HHS R01 DC011034NIDCD NIH HHS R21 DC006097NIDCD NIH HHS R21 DC008801NIGMS NIH HHS P01 GM051487NIGMS NIH HHS P41 GM103310
6 · The paper itself

Abstract

Hair bundles of the inner ear have a specialized structure and protein composition that underlies their sensitivity to mechanical stimulation. Using mass spectrometry, we identified and quantified >1,100 proteins, present from a few to 400,000 copies per stereocilium, from purified chick bundles; 336 of these were significantly enriched in bundles. Bundle proteins that we detected have been shown to regulate cytoskeleton structure and dynamics, energy metabolism, phospholipid synthesis and cell signaling. Three-dimensional imaging using electron tomography allowed us to count the number of actin-actin cross-linkers and actin-membrane connectors; these values compared well to those obtained from mass spectrometry. Network analysis revealed several hub proteins, including RDX (radixin) and SLC9A3R2 (NHERF2), which interact with many bundle proteins and may perform functions essential for bundle structure and function. The quantitative mass spectrometry of bundle proteins reported here establishes a framework for future characterization of dynamic processes that shape bundle structure and function.

Indexed as

AnimalsChick EmbryoEar, InnerHair Cells, AuditoryMass SpectrometryStereociliaVestibule, Labyrinth

Identifiers

PMID23334578
PMCPMC3581746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.