Evidence map›Paper›PMID 23334413›Full record

ArticleNature2013

Microbiota restricts trafficking of bacteria to mesenteric lymph nodes by CX(3)CR1(hi) cells.

Gretchen E Diehl, Randy S Longman, Jing-Xin Zhang, Beatrice Breart, Carolina Galan, Adolfo Cuesta, Susan R Schwab, Dan R Littman

Registry-linked trialAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06156956 (Fecal Microbiota Transplantation to Eradicate Antibiotic-resistance Bacteria From the Gastrointestinal Tract of Patients at High Risk of Infection and/or to Cut Off the Spread of Bacteria With Dangerous Mechanisms of Antibiotic Resistance), which is not on this map. Cited by 292 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
292citing papers in PubMed, 1 pooled it
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06156956 naunknown statusnot on this mapstarted 2023, after this paper: background citation

Fecal Microbiota Transplantation to Eradicate Antibiotic-resistance Bacteria From the Gastrointestinal Tract of Patients at High Risk of Infection and/or to Cut Off the Spread of Bacteria With Dangerous Mechanisms of Antibiotic Resistance

TypeinterventionalSponsorHuman Biome Institute S.A.Ran2023 to 2025Enrolled200ConditionsDrug Resistance, Bacterial, Antimicrobial Drug ResistanceArmsFecal Microbiota Transplantation
3 · Its place in the literature

Who cites it

292 citing papers in PubMed, 1 synthesis or guideline pooled it, 460 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Antibiotic Resistance Profiles ofAntibiotics (Basel, Switzerland) · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Maintenance of intestinal CX3CR1Nature communications · 2026
    Article
  9. Article
  10. Article
  11. Review
  12. Infection strategies ofGut microbes reports · 2026
    Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

232 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Gretchen E DiehlMolecular Pathogenesis Program, The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York 10016, USA. Gretchen.Diehl@med.nyu.edu
Randy S Longman
Jing-Xin Zhang
Beatrice Breart
Carolina Galan
Adolfo Cuesta
Susan R Schwab
Dan R Littman
New York University · USInserm · FRColumbia University · USHoward Hughes Medical Institute · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
TRAINING PROGRAM IN MOLECULAR ONCOLOGY &IMMUNOLOGYT32CA009161 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARROLL, WILLIAM L., LEVY, DAVID E · 1985 to 2020
$13.3M
The role of SPNS2 in T cell responsesR01AI085166 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Susan Ruth Schwab · 2011 to 2026
$6.5M
Multidisciplinary Training in Translational Gastrointestinal and Liver ResearchT32DK083256 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Timothy Cragin Wang · 2009 to 2026
$5.5M
Howard Hughes Medical InstituteNCI NIH HHS 5P30CA016087-32NCI NIH HHS P30 CA016087NCI NIH HHS T32 CA009161NIAID NIH HHS R01 AI085166NIAID NIH HHS R01AI085166NIDDK NIH HHS T32 DK083256NIDDK NIH HHS T32 DK083256-02
6 · The paper itself

Abstract

The intestinal microbiota has a critical role in immune system and metabolic homeostasis, but it must be tolerated by the host to avoid inflammatory responses that can damage the epithelial barrier separating the host from the luminal contents. Breakdown of this regulation and the resulting inappropriate immune response to commensals are thought to lead to the development of inflammatory bowel diseases such as Crohn's disease and ulcerative colitis. We proposed that the intestinal immune system is instructed by the microbiota to limit responses to luminal antigens. Here we demonstrate in mice that, at steady state, the microbiota inhibits the transport of both commensal and pathogenic bacteria from the lumen to a key immune inductive site, the mesenteric lymph nodes (MLNs). However, in the absence of Myd88 or under conditions of antibiotic-induced dysbiosis, non-invasive bacteria were trafficked to the MLNs in a CCR7-dependent manner, and induced both T-cell responses and IgA production. Trafficking was carried out by CX(3)CR1(hi) mononuclear phagocytes, an intestinal-cell population previously reported to be non-migratory. These findings define a central role for commensals in regulating the migration to the MLNs of CX(3)CR1(hi) mononuclear phagocytes endowed with the ability to capture luminal bacteria, thereby compartmentalizing the intestinal immune response to avoid inflammation.

Indexed as

AnimalsAnti-Bacterial AgentsAntigens, BacterialCell MovementCX3C Chemokine Receptor 1Dendritic CellsImmunity, MucosalImmunoglobulin AInflammationIntestinal MucosaLymph NodesMesenteryMetagenomeMiceMice, Inbred C57BLMyeloid Differentiation Factor 88Anti-Bacterial AgentsAntigens, BacterialCcr7 protein, mouseCX3C Chemokine Receptor 1Cx3cr1 protein, mouseImmunoglobulin AMyd88 protein, mouseMyeloid Differentiation Factor 88Receptors, CCR7Receptors, Chemokine

Identifiers

PMID23334413
PMCPMC3711636
OpenAlexW2017364473

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.