Evidence map›Paper›PMID 23334290›Full record

ArticleNature structural & molecular biology2013

Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains.

Swetansu K Hota, Saurabh K Bhardwaj, Sebastian Deindl, Yuan-chi Lin, Xiaowei Zhuang, Blaine Bartholomew

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
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  15. Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Swetansu K HotaDepartment of Biochemistry and Molecular Biology, Southern Illinois University School of Medicine, Carbondale, Illinois, USA.
Saurabh K Bhardwaj
Sebastian Deindl
Yuan-chi Lin
Xiaowei Zhuang
Blaine Bartholomew

Funding

TRANSCRIPTIONAL ACTIVATION BY REORGANIZING CHROMATINR01GM048413 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BARTHOLOMEW, BLAINE · 1998 to 2015
$4.7M
Chromatin Remodeling and Transcription RepressionR01GM070864 · NIGMS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI BARTHOLOMEW, BLAINE · 2004 to 2012
$2.4M
Single-molecule studies of ATP-dependent chromatin remodelingR01GM105637 · NIGMS · HARVARD UNIVERSITY · PI ZHUANG, XIAOWEI · 2013 to 2016
$1.3M
MECHANISM OF RNA POLYMERASE III RECOGNITIONR29GM048413 · NIGMS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI BARTHOLOMEW, BLAINE · 1993 to 1997
–
Howard Hughes Medical InstituteNIGMS NIH HHS GM 48413NIGMS NIH HHS R01 GM048413NIGMS NIH HHS R01 GM070864NIGMS NIH HHS R01 GM105637
6 · The paper itself

Abstract

The ISWI family of ATP-dependent chromatin remodelers represses transcription by changing nucleosome positions. ISWI regulates nucleosome positioning by requiring a minimal length of extranucleosomal DNA for moving nucleosomes. ISW2 from Saccharomyces cerevisiae, a member of the ISWI family, has a conserved domain called SLIDE (SANT-like ISWI domain) that binds to extranucleosomal DNA ~19 base pairs from the edge of nucleosomes. Loss of SLIDE binding does not perturb binding of the ATPase domain or the initial movement of DNA inside of nucleosomes. Not only is extranucleosomal DNA required to help recruit ISW2, but also the interactions of the SLIDE domain with extranucleosomal DNA are functionally required to move nucleosomes.

Indexed as

Adenosine TriphosphatasesBlotting, WesternCentrifugation, Density GradientChromatin Assembly and DisassemblyDNA, FungalFluorescence Resonance Energy TransferGene Expression Regulation, FungalHydroxyl RadicalNucleosomesPhotoaffinity LabelsProtein Structure, TertiarySaccharomyces cerevisiaeTranscription FactorsAdenosine TriphosphatasesDNA, FungalHydroxyl RadicalISWI proteinNucleosomesPhotoaffinity LabelsTranscription Factors

Identifiers

PMID23334290
PMCPMC3565048

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.