Evidence map›Paper›PMID 23334161›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2013

Conformational change and human cytochrome c function: mutation of residue 41 modulates caspase activation and destabilizes Met-80 coordination.

Tracy M Josephs, Matthew D Liptak, Gillian Hughes, Alexandra Lo, Rebecca M Smith, Sigurd M Wilbanks, Kara L Bren, Elizabeth C Ledgerwood

Open access · greenAbstract read
In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Altered conformational dynamics contribute to species-specific effects of cytochrome c mutations on caspase activation.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  3. Article
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  5. The Human CytochromeBiochemistry · 2020
    Article
  6. Distal Unfolding of Ferricytochrome c Induced by the F82K Mutation.International journal of molecular sciences · 2020
    Article
  7. Naturally Occurring A51V Variant of Human CytochromeThe journal of physical chemistry. B · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Tracy M JosephsDepartment of Biochemistry, University of Otago, PO Box 56, Dunedin, 9054, New Zealand.
Matthew D Liptak
Gillian Hughes
Alexandra Lo
Rebecca M Smith
Sigurd M Wilbanks
Kara L Bren
Elizabeth C Ledgerwood
University of Otago · NZUniversity of Rochester · USUniversity of Vermont · US

Funding

Dynamics-stability relationship in cytochromes cR01GM063170 · NIGMS · UNIVERSITY OF ROCHESTER · PI BREN, KARA L. · 2002 to 2010
$2.0M
NMR and DFT Investigation of Porphyrin Conformation in Cytochromes cF32GM089016 · NIGMS · UNIVERSITY OF ROCHESTER · PI LIPTAK, MATTHEW D · 2009 to 2011
$104k
NIGMS NIH HHS F32 GM089016NIGMS NIH HHS GM63170NIGMS NIH HHS R01 GM063170
6 · The paper itself

Abstract

Cytochrome c is a highly conserved protein, with 20 residues identical in all eukaryotic cytochromes c. Gly-41 is one of these invariant residues, and is the position of the only reported naturally occurring mutation in cytochrome c (human G41S). The basis, if any, for the conservation of Gly-41 is unknown. The mutation of Gly-41 to Ser enhances the apoptotic activity of cytochrome c without altering its role in mitochondrial electron transport. Here we have studied additional residue 41 variants and determined their effects on cytochrome c functions and conformation. A G41T mutation decreased the ability of cytochrome c to induce caspase activation and decreased the redox potential, whereas a G41A mutation had no impact on caspase induction but the redox potential increased. All residue 41 variants decreased the pK (a) of a structural transition of oxidized cytochrome c to the alkaline conformation, and this correlated with a destabilization of the interaction of Met-80 with the heme iron(III) at physiological pH. In reduced cytochrome c the G41T and G41S mutations had distinct effects on a network of hydrogen bonds involving Met-80, and in G41T the conformational mobility of two Ω-loops was altered. These results suggest the impact of residue 41 on the conformation of cytochrome c influences its ability to act in both of its physiological roles, electron transport and caspase activation.

Indexed as

ApoptosisPoint MutationAmino Acid SubstitutionCaspasesCell Line, TumorCytochromes cEnzyme ActivationGlycineHumansIronMethionineModels, MolecularNuclear Magnetic Resonance, BiomolecularOxidation-ReductionProtein ConformationCaspasesCytochromes cGlycineIronMethionine

Identifiers

PMID23334161
PMCPMC3582831
OpenAlexW2031764760

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.