Evidence map›Paper›PMID 23332401›Full record

ReviewTuberculosis (Edinburgh, Scotland)2013

Database resources for the tuberculosis community.

Jocelyne M Lew, Chunhong Mao, Maulik Shukla, Andrew Warren, Rebecca Will, Dmitry Kuznetsov, Ioannis Xenarios, Brian D Robertson, Stephen V Gordon, Dirk Schnappinger and 2 more

Abstract readReview
In one paragraph

Review in Tuberculosis (Edinburgh, Scotland), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Recent Characterization of Key Proteins to Combat Tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Biochemical Characterization of Isoniazid-resistantMolecular & cellular proteomics : MCP · 2018
    Article
  7. Article
  8. Article
  9. NCBI prokaryotic genome annotation pipeline.Nucleic acids research · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Mycobacterium tuberculosis metabolism.Cold Spring Harbor perspectives in medicine · 2014
    Review
  16. PolyTB: a genomic variation map for Mycobacterium tuberculosis.Tuberculosis (Edinburgh, Scotland) · 2014
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jocelyne M LewSwiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Chunhong Mao
Maulik Shukla
Andrew Warren
Rebecca Will
Dmitry Kuznetsov
Ioannis Xenarios
Brian D Robertson
Stephen V Gordon
Dirk Schnappinger
Stewart T Cole
Bruno Sobral

Funding

UniProt: A Centralized Protein Sequence and Function ResourceU41HG006104 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI APWEILER, ROLF · 2010 to 2014
$23.5M
Medical Research Council MR/J006874/1NHGRI NIH HHS 1 U41 HG006104-02NHGRI NIH HHS U41 HG006104NIAID NIH HHS HHSN272200900040C
6 · The paper itself

Abstract

Access to online repositories for genomic and associated "-omics" datasets is now an essential part of everyday research activity. It is important therefore that the Tuberculosis community is aware of the databases and tools available to them online, as well as for the database hosts to know what the needs of the research community are. One of the goals of the Tuberculosis Annotation Jamboree, held in Washington DC on March 7th-8th 2012, was therefore to provide an overview of the current status of three key Tuberculosis resources, TubercuList (tuberculist.epfl.ch), TB Database (www.tbdb.org), and Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org). Here we summarize some key updates and upcoming features in TubercuList, and provide an overview of the PATRIC site and its online tools for pathogen RNA-Seq analysis.

Indexed as

Databases, GeneticGenome, BacterialGenomicsHumansInternetMycobacterium tuberculosisTuberculosis

Identifiers

PMID23332401
PMCPMC3592388

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.