Evidence map›Paper›PMID 23328952›Full record

ArticleJournal of neural transmission (Vienna, Austria : 1996)2013

Structural comparison of the active site channels in rodent and primate vascular adhesion protein-1.

Eva Bligt-Lindén, Ramaiah Arunachalam, Vimal Parkash, Tiina Annamaria Salminen

Abstract read
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In one paragraph

Article in Journal of neural transmission (Vienna, Austria : 1996), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. The role of VAP-1 in cardiovascular disease: a review.Frontiers in cardiovascular medicine · 2025
    Review
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Eva Bligt-LindénStructural Bioinformatics Laboratory, Department of Biosciences, Åbo Akademi University, Tykistökatu 6A, 20520, Turku, Finland.
Ramaiah Arunachalam
Vimal Parkash
Tiina Annamaria Salminen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we have made homology models of mouse, rat, and monkey vascular adhesion protein-1 (VAP-1) to reveal basis for the species-specific ligand recognition of VAP-1. Based on the structural comparisons, rodent VAP-1s have a narrower active site channel than primate VAP-1s. The variable residues in mouse and rat VAP-1, Phe447 from arm I and the polar residues from the first α-helix of the D3 domain together with C-terminal residues are likely to affect ligand recognition and binding.

Indexed as

Models, MolecularAmino Acid SequenceAnimalsBinding SitesBiological EvolutionCatalytic DomainCell Adhesion MoleculesComputer SimulationHaplorhiniHumansLigandsMiceRatsCell Adhesion MoleculesLigands

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.