Evidence map›Paper›PMID 23328811›Full record

ArticleNeuro-oncology2013

Combined analysis of O6-methylguanine-DNA methyltransferase protein expression and promoter methylation provides optimized prognostication of glioblastoma outcome.

Shadi Lalezari, Arthur P Chou, Anh Tran, Orestes E Solis, Negar Khanlou, Weidong Chen, Sichen Li, Jose A Carrillo, Reshmi Chowdhury, Julia Selfridge and 22 more

Open access · bronzeAbstract read
In one paragraph

Article in Neuro-oncology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 5 pooled it
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 5 syntheses or guidelines pooled it, 113 citations in OpenAlex.

  1. Molecular Biomarker Testing for the Diagnosis of Diffuse Gliomas.Archives of pathology & laboratory medicine · 2022
    Guideline
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  16. Biomedicines · 2022
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 3 institutions in 1 country.

Shadi LalezariDepartment of Neurology, David Geffen School of Medicine at UCLA, University of California, Los Angeles, California, USA.
Arthur P Chou
Anh Tran
Orestes E Solis
Negar Khanlou
Weidong Chen
Sichen Li
Jose A Carrillo
Reshmi Chowdhury
Julia Selfridge
Desiree E Sanchez
Ryan W Wilson
Mira Zurayk
Jonathan Lalezari
Jerry J Lou
Laurel Ormiston
Karen Ancheta
Robert Hanna
Paul Miller
David Piccioni
Benjamin M Ellingson
Colin Buchanan
Paul S Mischel
Phioanh L Nghiemphu
Richard Green
He-Jing Wang
Whitney B Pope
Linda M Liau
Robert M Elashoff
Timothy F Cloughesy
William H Yong
Albert Lai
Kaiser Permanente · USUniversity of California, Los Angeles · USUniversity of California, Irvine · US

Funding

Genome-wide promoter methylation profiling of gliomaK08CA124479 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LAI, ALBERT · 2008 to 2012
$790k
NCI NIH HHS K08CA124479
6 · The paper itself

Abstract

backgroundPromoter methylation of the DNA repair gene, O-6-methylguanine-DNA methyltransferase (MGMT), is associated with improved treatment outcome for newly diagnosed glioblastoma (GBM) treated with standard chemoradiation. To determine the prognostic significance of MGMT protein expression as assessed by immunohistochemistry (IHC) and its relationship with methylation, we analyzed MGMT expression and promoter methylation with survival in a retrospective patient cohort.

methodsWe identified 418 patients with newly diagnosed GBM at University of California Los Angeles Kaiser Permanente Los Angeles, nearly all of whom received chemoradiation, and determined MGMT expression by IHC, and MGMT promoter methylation by methylation-specific PCR (MSP) and bisulfite sequencing (BiSEQ) of 24 neighboring CpG sites.

resultsWith use of the median percentage of cells staining by IHC as the threshold, patients with <30% staining had progression-free survival (PFS) of 10.9 months and overall survival (OS) of 20.5 months, compared with PFS of 7.8 months (P < .0001) and OS of 16.7 months (P < .0001) among patients with ≥30% staining. Inter- and intrareader correlation of IHC staining was high. Promoter methylation status by MSP was correlated with IHC staining. However, low IHC staining was frequently observed in the absence of promoter methylation. Increased methylation density determined by BiSEQ correlated with both decreased IHC staining and increased survival, providing a practical semiquantitative alternative to MSP. On the basis of multivariate analysis validated by bootstrap analysis, patients with tandem promoter methylation and low expression demonstrated improved OS and PFS, compared with the other combinations.

conclusionsOptimal assessment of MGMT status as a prognostic biomarker for patients with newly diagnosed GBM treated with chemoradiation requires determination of both promoter methylation and IHC protein expression.

Indexed as

DNA MethylationAdultAntineoplastic Agents, AlkylatingBrain NeoplasmsChemoradiotherapyDacarbazineDNA Modification MethylasesDNA, NeoplasmDNA Repair EnzymesFemaleFollow-Up StudiesGlioblastomaHumansMaleMiddle AgedNeoplasm StagingAntineoplastic Agents, AlkylatingDacarbazineDNA Modification MethylasesDNA, NeoplasmDNA Repair EnzymesMGMT protein, humanTemozolomideTumor Suppressor Proteins

Identifiers

PMID23328811
PMCPMC3578486
OpenAlexW2144941946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.