Evidence map›Paper›PMID 23327451›Full record

ArticleBMC research notes2013

Stromal protein degradation is incomplete in Arabidopsis thaliana autophagy mutants undergoing natural senescence.

Travis A Lee, Scott W Vande Wetering, Judy A Brusslan

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Chloroplast dismantling in leaf senescence.Journal of experimental botany · 2021
    Review
  5. Article
  6. Article
  7. Programmed chloroplast destruction during leaf senescence involves 13-lipoxygenase (13-LOX).Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Origin of the Autophagosomal Membrane in Plants.Frontiers in plant science · 2016
    Review
  9. Article
  10. Review
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Travis A LeeDepartment of Biological Sciences, California State University, Long Beach, 1250 Bellflower Boulevard, Long Beach, CA 90840-9502, USA.
Scott W Vande Wetering
Judy A Brusslan
California State University, Long Beach · US

Funding

Research Initiative for Scientific Enhancement at CSULBR25GM071638 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI BUONORA, PAUL T, FRASER, DEBORAH ANN · 2004 to 2022
$10.0M
Epigenetic Marks and Leaf Aging in ArabidopsisSC3GM113810 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI BRUSSLAN, JUDY ANN · 2015 to 2018
$331k
NIGMS NIH HHS R25 GM071638NIGMS NIH HHS SC3 GM113810
6 · The paper itself

Abstract

backgroundDegradation of highly abundant stromal proteins plays an important role in the nitrogen economy of the plant during senescence. Lines of evidence supporting proteolysis within the chloroplast and outside the chloroplast have been reported. Two extra-plastidic degradation pathways, chlorophagy and Rubisco Containing Bodies, rely on cytoplasmic autophagy.

resultsIn this work, levels of three stromal proteins (Rubisco large subunit, chloroplast glutamine synthetase and Rubisco activase) and one thylakoid protein (the major light harvesting complex protein of photosystem II) were measured during natural senescence in WT and in two autophagy T-DNA insertion mutants (atg5 and atg7). Thylakoid-localized protein decreased similarly in all genotypes, but stromal protein degradation was incomplete in the two atg mutants. In addition, degradation of two stromal proteins was observed in chloroplasts isolated from mid-senescence leaves.

conclusionsThese data suggest that autophagy does contribute to the complete proteolysis of stromal proteins, but does not play a major degenerative role. In addition, support for in organello degradation is provided.

Indexed as

AutophagyMutationAgingArabidopsisArabidopsis ProteinsChloroplastsProteolysisArabidopsis Proteins

Identifiers

PMID23327451
PMCPMC3724497
OpenAlexW2051388405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.