Evidence map›Paper›PMID 23326351›Full record

ArticlePloS one2013

Prime-boost immunization of rabbits with HIV-1 gp120 elicits potent neutralization activity against a primary viral isolate.

Kristin M Narayan, Nitish Agrawal, Sean X Du, Janelle E Muranaka, Katherine Bauer, Daniel P Leaman, Pham Phung, Kay Limoli, Helen Chen, Rebecca I Boenig and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Kristin M NarayanDepartment of Infectious Diseases, Maxygen, Inc., Redwood City, California, USA.
Nitish Agrawal
Sean X Du
Janelle E Muranaka
Katherine Bauer
Daniel P Leaman
Pham Phung
Kay Limoli
Helen Chen
Rebecca I Boenig
Terri Wrin
Michael B Zwick
Robert G Whalen
Maxygen (United States) · USScripps Research Institute · US

Funding

Viral Neutralization AssaysP01AI056375 · NIAID · MAXYGEN, INC. · PI WHALEN, ROBERT G. · 2005 to 2009
$11.1M
INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007606 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1999 to 2013
$2.1M
Engineering and sorting HIV-1 display Env libraries for vaccine designR33AI077381 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ZWICK, MICHAEL B · 2011 to 2013
$1.7M
Glycosylation Variants of HIV-1 EnvelopeR43AI067058 · NIAID · MAXYGEN, INC. · PI WHALEN, ROBERT GERALD · 2005 to 2005
$299k
Creation of Stable Cleaved Trimers of the HIV-1 Envelope ProteinR43AI070032 · NIAID · MAXYGEN, INC. · PI WHALEN, ROBERT GERALD · 2006 to 2006
$240k
NIAID NIH HHS P01 AI056375NIAID NIH HHS R33 AI077381NIAID NIH HHS R43 AI067058NIAID NIH HHS R43 AI070032NIAID NIH HHS T32 AI007606
6 · The paper itself

Abstract

Development of a vaccine for HIV-1 requires a detailed understanding of the neutralizing antibody responses that can be experimentally elicited to difficult-to-neutralize primary isolates. Rabbits were immunized with the gp120 subunit of HIV-1 JR-CSF envelope (Env) using a DNA-prime protein-boost regimen. We analyzed five sera that showed potent autologous neutralizing activity (IC50s at ∼10(3) to 10(4) serum dilution) against pseudoviruses containing Env from the primary isolate JR-CSF but not from the related isolate JR-FL. Pseudoviruses were created by exchanging each variable and constant domain of JR-CSF gp120 with that of JR-FL or with mutations in putative N-glycosylation sites. The sera contained different neutralizing activities dependent on C3 and V5, C3 and V4, or V4 regions located on the glycan-rich outer domain of gp120. All sera showed enhanced neutralizing activity toward an Env variant that lacked a glycosylation site in V4. The JR-CSF gp120 epitopes recognized by the sera are generally distinct from those of several well characterized mAbs (targeting conserved sites on Env) or other type-specific responses (targeting V1, V2, or V3 variable regions). The activity of one serum requires specific glycans that are also important for 2G12 neutralization and this serum blocked the binding of 2G12 to gp120. Our findings show that different fine specificities can achieve potent neutralization of HIV-1, yet this strong activity does not result in improved breadth.

Indexed as

AIDS VaccinesAmino Acid SequenceAnimalsAntibodies, MonoclonalAntibodies, NeutralizingBinding SitesEpitopesGlycosylationHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansImmune SeraImmunization, SecondaryModels, MolecularMolecular Sequence DataAIDS VaccinesAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV AntibodiesHIV Envelope Protein gp120Immune Sera

Identifiers

PMID23326351
PMCPMC3541383
OpenAlexW2000477468

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.