ArticleComparative and functional genomics2012
Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon.
Article in Comparative and functional genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Consequences of domestication in eastern oyster: Insights from whole genomic analyses.Evolutionary applications · 2024Article
- Genomic signatures of artificial selection in fecundity of Pacific white shrimp,Frontiers in genetics · 2022Article
- Detection of selection signatures in farmed coho salmon (Oncorhynchus kisutch) using dense genome-wide information.Scientific reports · 2021Article
- Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication.Epigenetics · 2020Article
- Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners.Frontiers in genetics · 2020Review
- Genomic Signatures After Five Generations of Intensive Selective Breeding: Runs of Homozygosity and Genetic Diversity in Representative Domestic and Wild Populations of Turbot (Frontiers in genetics · 2020Article
- Changed Patterns of Genomic Variation Following Recent Domestication: Selection Sweeps in Farmed Atlantic Salmon.Frontiers in genetics · 2020Article
- Comparing genomic signatures of domestication in two Atlantic salmon (Evolutionary applications · 2019Article
- A genome scan for selection signatures comparing farmed Atlantic salmon with two wild populations: Testing colocalization among outlier markers, candidate genes, and quantitative trait loci for production traits.Evolutionary applications · 2017Article
- Genetic Variation and Breeding Signature in Mass Selection Lines of the Pacific Oyster (Crassostrea gigas) Assessed by SNP Markers.PloS one · 2016Article
- Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding.Evolutionary applications · 2015Article
- Footprints of directional selection in wild Atlantic salmon populations: evidence for parasite-driven evolution?PloS one · 2014Article
- Applications in the search for genomic selection signatures in fish.Frontiers in genetics · 2014Review
- The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng.Frontiers in plant science · 2014Article
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Corrections and comments
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Authors and funding
9 authors.
Funding
Abstract
Domesticated animals provide a unique opportunity to identify genomic targets of artificial selection to the captive environment. Here, we screened three independent domesticated/captive Atlantic salmon (Salmo salar) strains and their wild progenitor populations in an effort to detect potential signals of domestication selection by typing of 261 SNPs and 70 microsatellite loci. By combining information from four different neutrality tests, in total ten genomic regions showed signs of directional selection based on multiple sources of evidence. Most of the identified candidate regions were rather small ranging from zero to a few centimorgans (cM) in the female Atlantic salmon linkage map. We also evaluated how adaptation from standing variation affects adjacent SNP and microsatellite variation along the chromosomes and, by using forward simulations with strong selection, we were able to generate genetic differentiation patterns comparable to the observed data. This study highlights the significance of standing genetic variation during the early stages of adaptation and represents a useful step towards identifying functional variants involved in domestication of Atlantic salmon.
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Registered trials
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