Evidence map›Paper›PMID 23325766›Full record

ArticleMolecular & cellular proteomics : MCP2013

Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis.

Haiyun Gan, Tanxi Cai, Xiwen Lin, Yujian Wu, Xiuxia Wang, Fuquan Yang, Chunsheng Han

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Gene regulation during meiosis.Trends in genetics : TIG · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Deletion ofCells · 2022
    Article
  14. Sperm acquire epididymis-derived proteins through epididymosomes.Human reproduction (Oxford, England) · 2022
    Article
  15. Review
  16. Proteome Informatics in Tibetan Sheep (Frontiers in veterinary science · 2022
    Article
  17. mCell proliferation · 2022
    Article
  18. Transcriptomics of Meiosis in the Male Mouse.Frontiers in cell and developmental biology · 2021
    Review
  19. Article
  20. Cloning, Molecular Characterization and Expression Patterns ofInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Haiyun GanState Key Laboratory of Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100080, PR China.
Tanxi Cai
Xiwen Lin
Yujian Wu
Xiuxia Wang
Fuquan Yang
Chunsheng Han
Chinese Academy of Sciences · CNInstitute of Biophysics · CNInstitute of Zoology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mammalian spermatogenesis consists of many cell types and biological processes and serves as an excellent model for studying gene regulation at transcriptional and post-transcriptional levels. Many key proteins, miRNAs, and perhaps piRNAs have been shown to be involved in post-transcriptional regulation of spermatogenesis. However, a systematic method for assessing the relationship between protein and mRNA expression has not been available for studying mechanisms of post-transcriptional regulation. In the present study, we used the iTRAQ-based quantitative proteomic approach to identify 2008 proteins in mouse type A spermatogonia, pachytene spermatocytes, round spermatids, and elongative spermatids with high confidence. Of these proteins, 1194 made up four dynamically changing clusters, which reflect the mitotic amplification, meiosis, and post-meiotic development of germ cells. We identified five major regulatory mechanisms termed "transcript only," "transcript degradation," "translation repression," "translation de-repression," and "protein degradation" based on changes in protein level relative to changes in mRNA level at the mitosis/meiosis transition and the meiosis/post-meiotic development transition. We found that post-transcriptional regulatory mechanisms are related to the generation of piRNAs and antisense transcripts. Our results provide a valuable inventory of proteins produced during mouse spermatogenesis and contribute to elucidating the mechanisms of the post-transcriptional regulation of gene expression in mammalian spermatogenesis.

Indexed as

RNA InterferenceTranscriptomeAnimalsGene Expression ProfilingMaleMiceMicroRNAsMolecular Sequence AnnotationOligonucleotide Array Sequence AnalysisProteomeProteomicsRNA, MessengerRNA, Small InterferingSpermatidsSpermatogenesisTestisMicroRNAsProteomeRNA, MessengerRNA, Small Interfering

Identifiers

PMID23325766
PMCPMC3650327
OpenAlexW2115645634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.