Evidence map›Paper›PMID 23325691›Full record

ArticleJournal of virology2013

Timeless-dependent DNA replication-coupled recombination promotes Kaposi's Sarcoma-associated herpesvirus episome maintenance and terminal repeat stability.

Jayaraju Dheekollu, Horng-Shen Chen, Kenneth M Kaye, Paul M Lieberman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Epstein-Barr virus-encoded microRNAs as regulators in host immune responses.International journal of biological sciences · 2018
    Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. KSHV Genome Replication and Maintenance.Frontiers in microbiology · 2016
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jayaraju DheekolluWistar Institute, Philadelphia, Pennsylvania, USA.
Horng-Shen Chen
Kenneth M Kaye
Paul M Lieberman
The Wistar Institute · USBrigham and Women's Hospital · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
GENETIC AND BIOCHEMICAL STUDIES OF THE KSHV LANA GENER01CA082036 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI KAYE, KENNETH M · 1999 to 2019
$7.6M
Regulation of KSHV LatencyR01CA117830 · NCI · WISTAR INSTITUTE · PI PAUL M. LIEBERMAN · 2006 to 2026
$6.4M
NCI NIH HHS CA117830NCI NIH HHS P30 CA010815NCI NIH HHS P30 CA10815NCI NIH HHS R01 CA082036NCI NIH HHS R01 CA117830
6 · The paper itself

Abstract

Kaposi's Sarcoma-associated herpesvirus (KSHV) is maintained as a stable episome in latently infected pleural effusion lymphoma (PEL) cells. Episome maintenance is conferred by the binding of the KSHV-encoded LANA protein to the viral terminal repeats (TR). Here, we show that DNA replication in the KSHV TR is coupled with DNA recombination and mediated in part through the cellular replication fork protection factors Timeless (Tim) and Tipin. We show by two-dimensional (2D) agarose gel electrophoresis that replication forks naturally stall and form recombination-like structures at the TR during an unperturbed cell cycle. Chromatin immunoprecipitation (ChIP) assays revealed that Tim and Tipin are selectively enriched at the KSHV TR during S phase and in a LANA-dependent manner. Tim depletion inhibited LANA-dependent TR DNA replication and caused the loss of KSHV episomes from latently infected PEL cells. Tim depletion resulted in the aberrant accumulation of recombination structures and arrested MCM helicase at TR. Tim depletion did not induce the KSHV lytic cycle or apoptotic cell death. We propose that KSHV episome maintenance requires Tim-assisted replication fork protection at the viral terminal repeats and that Tim-dependent recombination-like structures form at TR to promote DNA repeat stability and viral genome maintenance.

Indexed as

Antigens, ViralBromodeoxyuridineCarrier ProteinsCell Cycle ProteinsChromatin ImmunoprecipitationDNA-Binding ProteinsDNA PrimersDNA ReplicationElectrophoresis, Gel, Pulsed-FieldElectrophoresis, Gel, Two-DimensionalFlow CytometryGenomic InstabilityHerpesvirus 8, HumanHumansIn Situ Nick-End LabelingIntracellular Signaling Peptides and ProteinsAntigens, ViralBromodeoxyuridineCarrier ProteinsCell Cycle ProteinsDNA-Binding ProteinsDNA PrimersIntracellular Signaling Peptides and Proteinslatency-associated nuclear antigenNuclear ProteinsTIMELESS protein, humanTipin protein, human

Identifiers

PMID23325691
PMCPMC3624199
OpenAlexW2095725697

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.