Evidence map›Paper›PMID 23325033›Full record

ArticleCurrent microbiology2013

Expression of CspE by a psychrotrophic bacterium Enterobacter ludwigii PAS1, isolated from Indian Himalayan soil and in silico protein modelling, prediction of conserved residues and active sites.

Premalatha Kandasamy, Nidarshana Chaturvedi, Brijesh S Sisodia, Ajit K Shasany, Shachi Gahoi, Soma S Marla, Reeta Goel

Abstract read
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In one paragraph

Article in Current microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Premalatha KandasamyDepartment of Plant Biotechnology, Central Institute of Medicinal and Aromatic Plants, (Council of Scientific and Industrial Research), Lucknow 226015, Uttar Pradesh, India. premalatha1977@gmail.com
Nidarshana Chaturvedi
Brijesh S Sisodia
Ajit K Shasany
Shachi Gahoi
Soma S Marla
Reeta Goel
Central Institute of Medicinal and Aromatic Plants · INCouncil of Scientific and Industrial Research · INNational Bureau of Plant Genetic Resources · INGovind Ballabh Pant University of Agriculture and Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteome analysis of Enterobacter ludwigii PAS1 provide a powerful set of tool to study the cold shock proteins along with that combination of bioinformatics is useful for interpretation of comparative results from many species. There is a considerable interest in the use of psychrotrophic bacteria for nitrogen fixation, especially at hilly regions, thus better understanding of cold adaptation mechanisms too. The psychrotrophic E. ludwigii PAS1 grown at 30 and 4 °C, isolated from Himalaya soil was undertaken for proteomic responses during optimal and cold shock conditions. Comparative proteomic analyses using two-dimensional gel electrophoresis (2-DE) and MALDI-TOF/TOF MS revealed the presence of Cold shock protein E (CspE). Three-dimensional structure of CspE of E. ludwigii PAS1 divulge the presence of five antiparallel β-sheets forming a β-barrel structure with surface exposed aromatic and basic residues that were responsible for nucleic acid binding and also reveals the presence of highly conserved nucleic acid-binding motifs RNP1 and RNP2 in Csp family.

Indexed as

Catalytic DomainConserved SequenceGene ExpressionSoil MicrobiologyAmino Acid SequenceBacterial ProteinsComputer SimulationEnterobacterModels, MolecularMolecular Sequence AnnotationMolecular Sequence DataPhylogenyProtein ConformationProteomicsSequence AlignmentBacterial Proteins

Identifiers

PMID23325033
OpenAlexW2142763543

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.